ENSG00000166402


Homo sapiens

Features
Gene ID: ENSG00000166402
  
Biological name :TUB
  
Synonyms : P50607 / TUB / tubby bipartite transcription factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: p15.4
Gene start: 8019244
Gene end: 8106112
  
Corresponding Affymetrix probe sets: 208431_s_at (Human Genome U133 Plus 2.0 Array)   210737_at (Human Genome U133 Plus 2.0 Array)   228882_at (Human Genome U133 Plus 2.0 Array)   228883_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434400
Ensembl peptide - ENSP00000299506
Ensembl peptide - ENSP00000305426
NCBI entrez gene - 7275     See in Manteia.
OMIM - 601197
RefSeq - XM_011520344
RefSeq - NM_003320
RefSeq - NM_177972
RefSeq - XM_005253109
RefSeq Peptide - NP_813977
RefSeq Peptide - NP_003311
swissprot - P50607
swissprot - E9PQR4
Ensembl - ENSG00000166402
  
Related genetic diseases (OMIM): 616188 - ?Retinal dystrophy and obesity, 616188
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tubENSDARG00000062165Danio rerio
 TUBENSGALG00000005986Gallus gallus
 TubENSMUSG00000031028Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TULP3 / O75386 / tubby like protein 3ENSG0000007824643
TULP1 / O00294 / tubby like protein 1ENSG0000011204142
TULP2 / O00295 / tubby like protein 2ENSG0000010480434
TULP4 / Q9NRJ4 / tubby like protein 4ENSG0000013033821
WDR35 / Q9P2L0 / WD repeat domain 35ENSG0000011896519


Protein motifs (from Interpro)
Interpro ID Name
 IPR000007  Tubby, C-terminal
 IPR005398  Tubby, N-terminal
 IPR018066  Tubby, C-terminal, conserved site
 IPR025659  Tubby-like, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006909 phagocytosis IEA
 biological_processGO:0006910 phagocytosis, recognition IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0009725 response to hormone IEA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050766 positive regulation of phagocytosis IDA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0097500 receptor localization to non-motile cilium IBA
 biological_processGO:1903546 protein localization to photoreceptor outer segment IBA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005929 cilium IBA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IBA
 molecular_functionGO:0044877 protein-containing complex binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000483 Astigmatism 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007663 Decreased central vision 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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