ENSGALG00000005986


Gallus gallus

Features
Gene ID: ENSGALG00000005986
  
Biological name :TUB
  
Synonyms : TUB / tubby bipartite transcription factor
  
Possible biological names infered from orthology : P50586 / P50607
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 10199239
Gene end: 10319919
  
Corresponding Affymetrix probe sets: Gga.12701.1.S1_at (Chicken Array)   Gga.12701.1.S1_s_at (Chicken Array)   GgaAffx.26682.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049688
Ensembl peptide - ENSGALP00000055677
Ensembl peptide - ENSGALP00000055198
NCBI entrez gene - 423061     See in Manteia.
RefSeq - XM_015286506
RefSeq - XM_015286503
RefSeq - XM_015286504
RefSeq - XM_015286505
RefSeq - XM_015286497
RefSeq - XM_015286499
RefSeq - XM_015286500
RefSeq - XM_015286501
RefSeq - XM_015286502
swissprot - A0A1D5PRZ8
swissprot - A0A1D5PQN3
swissprot - A0A1D5PAC6
Ensembl - ENSGALG00000005986
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tubENSDARG00000062165Danio rerio
 TUBENSG00000166402Homo sapiens
 TubENSMUSG00000031028Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TULP3 / tubby like protein 3 / O75386* / O88413*ENSGALG0000001342457
TULP1 / Tubby-related protein 1 / O00294* / Q9Z273* / tubby like protein 1*ENSGALG0000003130143
TULP4 / tubby like protein 4 / Q9JIL5* / Q9NRJ4*ENSGALG0000003737722
WDR35* / Q8BND3* / Q9P2L0* / WD repeat domain 35*ENSGALG0000001647711
WDR35* / Q8BND3* / Q9P2L0* / WD repeat domain 35*ENSGALG000000385446


Protein motifs (from Interpro)
Interpro ID Name
 IPR000007  Tubby, C-terminal
 IPR005398  Tubby, N-terminal
 IPR018066  Tubby, C-terminal, conserved site
 IPR025659  Tubby-like, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006910 phagocytosis, recognition IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050766 positive regulation of phagocytosis IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0097500 receptor localization to non-motile cilium IEA
 biological_processGO:1903546 protein localization to photoreceptor outer segment IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0044877 protein-containing complex binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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