ENSGALG00000013424


Gallus gallus

Features
Gene ID: ENSGALG00000013424
  
Biological name :TULP3
  
Synonyms : tubby like protein 3 / TULP3
  
Possible biological names infered from orthology : O75386 / O88413
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 75620435
Gene end: 75637015
  
Corresponding Affymetrix probe sets: GgaAffx.8557.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021856
NCBI entrez gene - 426085     See in Manteia.
RefSeq - XM_004938086
RefSeq - XM_423762
RefSeq - XM_004938087
RefSeq - XM_015292838
swissprot - E1BSR1
Ensembl - ENSGALG00000013424
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zmp:0000000711ENSDARG00000063672Danio rerio
 TULP3ENSG00000078246Homo sapiens
 Tulp3ENSMUSG00000001521Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TUB / tubby bipartite transcription factor / P50586* / P50607*ENSGALG0000000598659
TULP1 / Tubby-related protein 1 / O00294* / Q9Z273* / tubby like protein 1*ENSGALG0000003130141
TULP4 / tubby like protein 4 / Q9JIL5* / Q9NRJ4*ENSGALG0000003737724
WDR35* / Q8BND3* / Q9P2L0* / WD repeat domain 35*ENSGALG0000001647712
WDR35* / Q8BND3* / Q9P2L0* / WD repeat domain 35*ENSGALG000000385445


Protein motifs (from Interpro)
Interpro ID Name
 IPR000007  Tubby, C-terminal
 IPR005398  Tubby, N-terminal
 IPR018066  Tubby, C-terminal, conserved site
 IPR025659  Tubby-like, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001841 neural tube formation IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0008277 regulation of G-protein coupled receptor protein signaling pathway IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0021904 dorsal/ventral neural tube patterning IEA
 biological_processGO:0021914 negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning IEA
 biological_processGO:0021915 neural tube development IEA
 biological_processGO:0021953 central nervous system neuron differentiation IEA
 biological_processGO:0031076 embryonic camera-type eye development IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0045879 negative regulation of smoothened signaling pathway IEA
 biological_processGO:0048702 embryonic neurocranium morphogenesis IEA
 biological_processGO:0060173 limb development IEA
 biological_processGO:0060348 bone development IEA
 biological_processGO:0060434 bronchus morphogenesis IEA
 biological_processGO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 biological_processGO:0061548 ganglion development IEA
 biological_processGO:0097500 receptor localization to non-motile cilium IBA
 biological_processGO:1901621 negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 biological_processGO:1903546 protein localization to photoreceptor outer segment IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0030991 intraciliary transport particle A IEA
 cellular_componentGO:0097546 ciliary base IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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