ENSG00000166889


Homo sapiens

Features
Gene ID: ENSG00000166889
  
Biological name :PATL1
  
Synonyms : PAT1 homolog 1, processing body mRNA decay factor / PATL1 / Q86TB9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q12.1
Gene start: 59636716
Gene end: 59668980
  
Corresponding Affymetrix probe sets: 225466_at (Human Genome U133 Plus 2.0 Array)   225468_at (Human Genome U133 Plus 2.0 Array)   235234_at (Human Genome U133 Plus 2.0 Array)   235235_s_at (Human Genome U133 Plus 2.0 Array)   244342_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000300146
NCBI entrez gene - 219988     See in Manteia.
OMIM - 614660
RefSeq - XM_017017339
RefSeq - NM_152716
RefSeq - XM_005273834
RefSeq - XM_011544811
RefSeq - XM_005273833
RefSeq Peptide - NP_689929
swissprot - Q86TB9
Ensembl - ENSG00000166889
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 patl1ENSDARG00000017423Danio rerio
 1 ENSMUSG00000046139Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PATL2 / C9JE40 / PAT1 homolog 2ENSG0000022947424


Protein motifs (from Interpro)
Interpro ID Name
 IPR019167  Topoisomerase II-associated protein PAT1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IDA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IDA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay TAS
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030014 CCR4-NOT complex IDA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008266 poly(U) RNA binding IDA
 molecular_functionGO:0034046 poly(G) binding IDA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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