ENSG00000229474


Homo sapiens

Features
Gene ID: ENSG00000229474
  
Biological name :PATL2
  
Synonyms : C9JE40 / PAT1 homolog 2 / PATL2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q21.1
Gene start: 44665732
Gene end: 44711316
  
Corresponding Affymetrix probe sets: 230753_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453915
Ensembl peptide - ENSP00000453898
Ensembl peptide - ENSP00000454201
Ensembl peptide - ENSP00000416673
Ensembl peptide - ENSP00000453695
Ensembl peptide - ENSP00000453723
NCBI entrez gene - 197135     See in Manteia.
OMIM - 614661
RefSeq - XM_017022001
RefSeq - XM_011521343
RefSeq - XM_011521344
RefSeq - XM_011521345
RefSeq - XM_011521346
RefSeq - XM_011521347
RefSeq - XM_011521348
RefSeq - XM_017022000
RefSeq - NM_001145112
RefSeq - NM_001330283
RefSeq - XM_011521336
RefSeq - XM_011521337
RefSeq - XM_011521338
RefSeq - XM_011521339
RefSeq - XM_011521340
RefSeq - XM_011521341
RefSeq - XM_011521342
RefSeq Peptide - NP_001317212
RefSeq Peptide - NP_001138584
swissprot - H0YN77
swissprot - H0YMQ2
swissprot - C9JE40
swissprot - H0YNY1
swissprot - H0YMS5
Ensembl - ENSG00000229474
  
Related genetic diseases (OMIM): 617743 - Oocyte maturation defect 4, 617743
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-103b1.2ENSDARG00000089567Danio rerio
 PATL2ENSGALG00000002167Gallus gallus
 2 ENSMUSG00000027233Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PATL1 / Q86TB9 / PAT1 homolog 1, processing body mRNA decay factorENSG0000016688934


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR019167  Topoisomerase II-associated protein PAT1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0010607 negative regulation of cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0017148 negative regulation of translation ISS
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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