ENSDARG00000089567


Danio rerio

Features
Gene ID: ENSDARG00000089567
  
Biological name :si:ch211-103b1.2
  
Synonyms : si:ch211-103b1.2
  
Possible biological names infered from orthology : 2 / A2ARM1 / C9JE40 / PAT1 homolog 2 / PATL2
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 13091842
Gene end: 13106963
  
Corresponding Affymetrix probe sets: Dr.6400.1.A1_at (Zebrafish Array)   XM_678169_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000145192
Ensembl peptide - ENSDARP00000110341
Ensembl peptide - ENSDARP00000148593
NCBI entrez gene - 556271     See in Manteia.
RefSeq - XM_678169
swissprot - E7FAC4
ZFIN ID - ZDB-GENE-121214-350
Ensembl - ENSDARG00000089567
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PATL2ENSGALG00000002167Gallus gallus
 PATL2ENSG00000229474Homo sapiens
 2 ENSMUSG00000027233Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
patl1 / protein associated with topoisomerase II homolog 1 (yeast) / 1 * / Q3TC46* / Q86TB9* / PAT1 homolog 1, processing body mRNA decay factor*ENSDARG0000001742326


Protein motifs (from Interpro)
Interpro ID Name
 IPR019167  Topoisomerase II-associated protein PAT1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 cellular_componentGO:0000932 P-body IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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