ENSMUSG00000027233


Mus musculus

Features
Gene ID: ENSMUSG00000027233
  
Biological name :Patl2
  
Synonyms : 2 / A2ARM1 / Patl2
  
Possible biological names infered from orthology : C9JE40 / PAT1 homolog 2
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: E5
Gene start: 122120108
Gene end: 122186189
  
Corresponding Affymetrix probe sets: 10486935 (MoGene1.0st)   1430735_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000028665
NCBI entrez gene - 67578     See in Manteia.
MGI - MGI:1914828
RefSeq - XM_017319224
RefSeq - NM_026251
RefSeq - XM_006500086
RefSeq - XM_017319223
RefSeq Peptide - NP_080527
swissprot - A2ARM1
Ensembl - ENSMUSG00000027233
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-103b1.2ENSDARG00000089567Danio rerio
 PATL2ENSGALG00000002167Gallus gallus
 PATL2ENSG00000229474Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
1 / Patl1 / Q3TC46 / Q86TB9* / PAT1 homolog 1, processing body mRNA decay factor*ENSMUSG0000004613931


Protein motifs (from Interpro)
Interpro ID Name
 IPR019167  Topoisomerase II-associated protein PAT1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0010607 negative regulation of cytoplasmic mRNA processing body assembly ISO
 biological_processGO:0017148 negative regulation of translation ISO
 cellular_componentGO:0000932 P-body ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0002151 G-quadruplex RNA binding ISO
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008266 poly(U) RNA binding ISO
 molecular_functionGO:0030371 translation repressor activity ISO
 molecular_functionGO:0034046 poly(G) binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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