ENSG00000169813


Homo sapiens

Features
Gene ID: ENSG00000169813
  
Biological name :HNRNPF
  
Synonyms : heterogeneous nuclear ribonucleoprotein F / HNRNPF / P52597
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q11.21
Gene start: 43385617
Gene end: 43409166
  
Corresponding Affymetrix probe sets: 201376_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000400433
Ensembl peptide - ENSP00000349573
Ensembl peptide - ENSP00000438061
Ensembl peptide - ENSP00000490768
Ensembl peptide - ENSP00000338477
Ensembl peptide - ENSP00000348345
NCBI entrez gene - 3185     See in Manteia.
OMIM - 601037
RefSeq - NM_001098205
RefSeq - NM_001098204
RefSeq - NM_001098206
RefSeq - NM_001098207
RefSeq - NM_001098208
RefSeq - NM_004966
RefSeq Peptide - NP_004957
RefSeq Peptide - NP_001091676
RefSeq Peptide - NP_001091677
RefSeq Peptide - NP_001091678
RefSeq Peptide - NP_001091674
RefSeq Peptide - NP_001091675
swissprot - P52597
swissprot - A0A1B0GW42
swissprot - A0A024R7T3
Ensembl - ENSG00000169813
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnph1ENSDARG00000040881Danio rerio
 hnrnph1lENSDARG00000005551Danio rerio
 HNRNPH2ENSGALG00000031120Gallus gallus
 HnrnpfENSMUSG00000042079Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P31943 / HNRNPH1 / heterogeneous nuclear ribonucleoprotein H1ENSG0000016904577
P55795 / HNRNPH2 / heterogeneous nuclear ribonucleoprotein H2ENSG0000012694575
P31942 / HNRNPH3 / heterogeneous nuclear ribonucleoprotein H3ENSG0000009674646
GRSF1 / Q12849 / G-rich RNA sequence binding factor 1ENSG0000013246337
ESRP1 / Q6NXG1 / epithelial splicing regulatory protein 1ENSG0000010441329
ESRP2 / Q9H6T0 / epithelial splicing regulatory protein 2ENSG0000010306727
Q8IXT5 / RBM12B / RNA binding motif protein 12BENSG0000018380823
RBM12 / Q9NTZ6 / RNA binding motif protein 12ENSG0000024446221


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012996  Zinc finger, CHHC-type
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway TAS
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0035722 interleukin-12-mediated signaling pathway TAS
 biological_processGO:0043484 regulation of RNA splicing IMP
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0003727 single-stranded RNA binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0017025 TBP-class protein binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA
Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100320 O43251 / RBFOX2 / RNA binding fox-1 homolog 2  / complex
 ENSG00000169045 P31943 / HNRNPH1 / heterogeneous nuclear ribonucleoprotein H1  / complex






 

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