ENSG00000100320


Homo sapiens

Features
Gene ID: ENSG00000100320
  
Biological name :RBFOX2
  
Synonyms : O43251 / RBFOX2 / RNA binding fox-1 homolog 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q12.3
Gene start: 35738736
Gene end: 36028425
  
Corresponding Affymetrix probe sets: 212104_s_at (Human Genome U133 Plus 2.0 Array)   213898_at (Human Genome U133 Plus 2.0 Array)   213901_x_at (Human Genome U133 Plus 2.0 Array)   216215_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000405651
Ensembl peptide - ENSP00000391670
Ensembl peptide - ENSP00000407855
Ensembl peptide - ENSP00000475142
Ensembl peptide - ENSP00000474464
Ensembl peptide - ENSP00000413035
Ensembl peptide - ENSP00000262829
Ensembl peptide - ENSP00000352328
Ensembl peptide - ENSP00000380470
Ensembl peptide - ENSP00000380472
Ensembl peptide - ENSP00000384944
Ensembl peptide - ENSP00000386177
NCBI entrez gene - 23543     See in Manteia.
OMIM - 612149
RefSeq - XM_017028698
RefSeq - XM_006724192
RefSeq - XM_006724193
RefSeq - XM_006724194
RefSeq - XM_017028686
RefSeq - XM_017028687
RefSeq - XM_017028688
RefSeq - XM_017028689
RefSeq - XM_017028690
RefSeq - XM_017028691
RefSeq - XM_017028692
RefSeq - XM_017028693
RefSeq - XM_017028694
RefSeq - XM_017028695
RefSeq - XM_017028696
RefSeq - XM_017028697
RefSeq - NM_001031695
RefSeq - NM_001082576
RefSeq - NM_001082577
RefSeq - NM_001082578
RefSeq - NM_001082579
RefSeq - NM_001349992
RefSeq - NM_001349994
RefSeq - NM_014309
RefSeq - XM_005261428
RefSeq - XM_005261429
RefSeq - XM_005261430
RefSeq - XM_005261431
RefSeq - XM_005261432
RefSeq - XM_005261433
RefSeq - XM_005261435
RefSeq - XM_005261437
RefSeq - XM_006724185
RefSeq - XM_006724186
RefSeq - XM_006724187
RefSeq - XM_006724188
RefSeq - XM_006724189
RefSeq - XM_006724190
RefSeq - XM_006724191
RefSeq Peptide - NP_001336921
RefSeq Peptide - NP_001336923
RefSeq Peptide - NP_055124
RefSeq Peptide - NP_001026865
RefSeq Peptide - NP_001076045
RefSeq Peptide - NP_001076046
RefSeq Peptide - NP_001076047
RefSeq Peptide - NP_001076048
swissprot - O43251
swissprot - B0QYY6
swissprot - B0QYY4
swissprot - B0QYY7
swissprot - S4R3K7
swissprot - S4R469
swissprot - B0QYV1
Ensembl - ENSG00000100320
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbfox2ENSDARG00000052182Danio rerio
 RBFOX2ENSGALG00000012540Gallus gallus
 Q8BP71ENSMUSG00000033565Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9NWB1 / RBFOX1 / RNA binding fox-1 homolog 1ENSG0000007832855
A6NFN3 / RBFOX3 / RNA binding fox-1 homolog 3ENSG0000016728147


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain
 IPR034237  FOX1, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway TAS
 biological_processGO:0010724 regulation of definitive erythrocyte differentiation IEA
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0021942 radial glia guided migration of Purkinje cell IEA
 biological_processGO:0030520 intracellular estrogen receptor signaling pathway IDA
 biological_processGO:0042127 regulation of cell proliferation TAS
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0048813 dendrite morphogenesis IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IDA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000169813 HNRNPF / P52597 / heterogeneous nuclear ribonucleoprotein F  / complex
 ENSG00000169045 P31943 / HNRNPH1 / heterogeneous nuclear ribonucleoprotein H1  / complex






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr