ENSG00000078328


Homo sapiens

Features
Gene ID: ENSG00000078328
  
Biological name :RBFOX1
  
Synonyms : Q9NWB1 / RBFOX1 / RNA binding fox-1 homolog 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p13.3
Gene start: 5239802
Gene end: 7713338
  
Corresponding Affymetrix probe sets: 1553422_s_at (Human Genome U133 Plus 2.0 Array)   221217_s_at (Human Genome U133 Plus 2.0 Array)   235070_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000454250
Ensembl peptide - ENSP00000450402
Ensembl peptide - ENSP00000458748
Ensembl peptide - ENSP00000493140
Ensembl peptide - ENSP00000493041
Ensembl peptide - ENSP00000484837
Ensembl peptide - ENSP00000309117
Ensembl peptide - ENSP00000344196
Ensembl peptide - ENSP00000347855
Ensembl peptide - ENSP00000391269
Ensembl peptide - ENSP00000402745
Ensembl peptide - ENSP00000438768
Ensembl peptide - ENSP00000446842
Ensembl peptide - ENSP00000447281
Ensembl peptide - ENSP00000447717
Ensembl peptide - ENSP00000447753
Ensembl peptide - ENSP00000448496
Ensembl peptide - ENSP00000450031
NCBI entrez gene - 54715     See in Manteia.
OMIM - 605104
RefSeq - XM_017023343
RefSeq - XM_017023323
RefSeq - XM_017023324
RefSeq - XM_017023325
RefSeq - XM_017023326
RefSeq - XM_017023327
RefSeq - XM_017023328
RefSeq - XM_017023329
RefSeq - XM_017023330
RefSeq - XM_017023331
RefSeq - XM_017023332
RefSeq - XM_017023333
RefSeq - XM_017023334
RefSeq - XM_017023335
RefSeq - XM_017023336
RefSeq - XM_017023337
RefSeq - XM_017023338
RefSeq - XM_017023339
RefSeq - XM_017023340
RefSeq - XM_017023341
RefSeq - XM_017023342
RefSeq - NM_001142333
RefSeq - NM_001142334
RefSeq - NM_001308117
RefSeq - NM_018723
RefSeq - NM_145891
RefSeq - NM_145892
RefSeq - NM_145893
RefSeq - XM_005255386
RefSeq - XM_005255387
RefSeq - XM_005255388
RefSeq - XM_005255390
RefSeq - XM_005255391
RefSeq - XM_005255394
RefSeq - XM_011522546
RefSeq - XM_011522547
RefSeq - XM_011522548
RefSeq - XM_017023318
RefSeq - XM_017023319
RefSeq - XM_017023320
RefSeq - XM_017023321
RefSeq - XM_017023322
RefSeq Peptide - NP_665898
RefSeq Peptide - NP_665899
RefSeq Peptide - NP_665900
RefSeq Peptide - NP_001295046
RefSeq Peptide - NP_061193
RefSeq Peptide - NP_001135805
RefSeq Peptide - NP_001135806
swissprot - F8VZY7
swissprot - H3BM62
swissprot - I3L1D4
swissprot - B7Z1U7
swissprot - Q9NWB1
swissprot - A0A087X2B1
swissprot - J3KNW3
swissprot - A0A286YFF2
swissprot - A0A286YEU2
swissprot - F5H0M1
swissprot - F8VR27
swissprot - F8VRS4
swissprot - F8VZG9
Ensembl - ENSG00000078328
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q642J5ENSDARG00000014746Danio rerio
 RBFOX1ENSGALG00000034325Gallus gallus
 Q9JJ43ENSMUSG00000008658Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O43251 / RBFOX2 / RNA binding fox-1 homolog 2ENSG0000010032059
A6NFN3 / RBFOX3 / RNA binding fox-1 homolog 3ENSG0000016728156


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain
 IPR034237  FOX1, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0050658 RNA transport NAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005802 trans-Golgi network IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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