ENSDARG00000052182


Danio rerio

Features
Gene ID: ENSDARG00000052182
  
Biological name :rbfox2
  
Synonyms : rbfox2 / RNA binding fox-1 homolog 2
  
Possible biological names infered from orthology : Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 2 (Rbfox2), transcript variant 10, mRNA. / O43251 / Q8BP71
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 296130
Gene end: 342216
  
Corresponding Affymetrix probe sets: Dr.10524.1.S1_at (Zebrafish Array)   Dr.10524.2.S1_a_at (Zebrafish Array)   Dr.18162.1.S1_at (Zebrafish Array)   NM_214746_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000068474
NCBI entrez gene - 406569     See in Manteia.
RefSeq - NM_214746
RefSeq - XM_021476828
RefSeq Peptide - NP_999911
swissprot - F1QZC1
ZFIN ID - ZDB-GENE-040426-2464
Ensembl - ENSDARG00000052182
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBFOX2ENSGALG00000012540Gallus gallus
 O43251ENSG00000100320Homo sapiens
 Q8BP71ENSMUSG00000033565Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbfox1 / Q642J5 / RNA binding fox-1 homolog 1 / Q9NWB1* / Q9JJ43* / RNA binding 1 *ENSDARG0000001474668
rbfox3a / RNA binding fox-1 homolog 3a / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000001008359
Q7ZT82 / rbfox1l / RNA binding fox-1 homolog 1, likeENSDARG0000002118455
rbfox3b / RNA binding fox-1 homolog 3b / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000007431050


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR025670  Fox-1 C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0043484 regulation of RNA splicing IMP
 biological_processGO:0048739 cardiac muscle fiber development IGI
 biological_processGO:0048741 skeletal muscle fiber development IGI
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005277 skeletal muscle skeletal muscle decreased force , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr