ENSDARG00000010083


Danio rerio

Features
Gene ID: ENSDARG00000010083
  
Biological name :rbfox3a
  
Synonyms : rbfox3a / RNA binding fox-1 homolog 3a
  
Possible biological names infered from orthology : A6NFN3 / Q8BIF2 / RBFOX3 / RNA binding 3 / RNA binding fox-1 homolog 3
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 32729470
Gene end: 33251465
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000138305
Ensembl peptide - ENSDARP00000127143
Ensembl peptide - ENSDARP00000144068
swissprot - A0A0R4IT73
swissprot - A0A286YA75
swissprot - U3JA78
ZFIN ID - ZDB-GENE-111213-1
Ensembl - ENSDARG00000010083
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBFOX3ENSGALG00000032889Gallus gallus
 A6NFN3ENSG00000167281Homo sapiens
 Q8BIF2ENSMUSG00000025576Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbfox1 / Q642J5 / RNA binding fox-1 homolog 1 / Q9NWB1* / Q9JJ43* / RNA binding 1 *ENSDARG0000001474664
rbfox3b / RNA binding fox-1 homolog 3b / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000007431060
Q7ZT82 / rbfox1l / RNA binding fox-1 homolog 1, likeENSDARG0000002118451
rbfox2 / RNA binding fox-1 homolog 2 / O43251*ENSDARG0000005218238


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain
 IPR034237  FOX1, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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