ENSGALG00000032889


Gallus gallus

Features
Gene ID: ENSGALG00000032889
  
Biological name :RBFOX3
  
Synonyms : RBFOX3 / RNA binding fox-1 homolog 3
  
Possible biological names infered from orthology : A6NFN3 / Q8BIF2 / RNA binding 3
  
Species: Gallus gallus
  
Chr. number: 18
Strand: 1
Band:
Gene start: 9810058
Gene end: 9836888
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000052031
Ensembl peptide - ENSGALP00000056975
Ensembl peptide - ENSGALP00000053277
Ensembl peptide - ENSGALP00000050927
NCBI entrez gene - 100857589     See in Manteia.
RefSeq - XM_015295593
RefSeq - XM_015295590
RefSeq - XM_015295591
RefSeq - XM_015295592
RefSeq - XM_004946288
RefSeq - XM_015295578
RefSeq - XM_015295580
RefSeq - XM_015295581
RefSeq - XM_015295582
RefSeq - XM_015295583
RefSeq - XM_015295584
RefSeq - XM_015295585
RefSeq - XM_015295586
RefSeq - XM_015295587
RefSeq - XM_015295588
RefSeq - XM_015295589
swissprot - A0A1D5PVK3
swissprot - A0A1D5PKC0
swissprot - A0A1D5PDT1
Ensembl - ENSGALG00000032889
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbfox3aENSDARG00000010083Danio rerio
 rbfox3bENSDARG00000074310Danio rerio
 A6NFN3ENSG00000167281Homo sapiens
 Q8BIF2ENSMUSG00000025576Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBFOX1 / RNA binding fox-1 homolog 1 / Q9JJ43* / Q9NWB1* / RNA binding 1 *ENSGALG0000003432550
RBFOX2 / RNA binding fox-1 homolog 2 / O43251* / Q8BP71* / Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 2 (Rbfox2), transcript variant 10, mRNA.*ENSGALG0000001254047


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043204 perikaryon IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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