ENSDARG00000074310


Danio rerio

Features
Gene ID: ENSDARG00000074310
  
Biological name :rbfox3b
  
Synonyms : rbfox3b / RNA binding fox-1 homolog 3b
  
Possible biological names infered from orthology : A6NFN3 / Q8BIF2 / RBFOX3 / RNA binding 3 / RNA binding fox-1 homolog 3
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 8323586
Gene end: 8542577
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000125707
Ensembl peptide - ENSDARP00000125909
Ensembl peptide - ENSDARP00000126058
Ensembl peptide - ENSDARP00000149975
Ensembl peptide - ENSDARP00000155985
swissprot - I3IS43
swissprot - I3ISM5
swissprot - I3IT07
ZFIN ID - ZDB-GENE-091204-46
Ensembl - ENSDARG00000074310
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBFOX3ENSGALG00000032889Gallus gallus
 A6NFN3ENSG00000167281Homo sapiens
 Q8BIF2ENSMUSG00000025576Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbfox3a / RNA binding fox-1 homolog 3a / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000001008374
rbfox1 / Q642J5 / RNA binding fox-1 homolog 1 / Q9NWB1* / Q9JJ43* / RNA binding 1 *ENSDARG0000001474668
Q7ZT82 / rbfox1l / RNA binding fox-1 homolog 1, likeENSDARG0000002118453
rbfox2 / RNA binding fox-1 homolog 2 / O43251*ENSDARG0000005218240


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain
 IPR034237  FOX1, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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