ENSGALG00000012540


Gallus gallus

Features
Gene ID: ENSGALG00000012540
  
Biological name :RBFOX2
  
Synonyms : RBFOX2 / RNA binding fox-1 homolog 2
  
Possible biological names infered from orthology : Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 2 (Rbfox2), transcript variant 10, mRNA. / O43251 / Q8BP71
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 51964351
Gene end: 52040063
  
Corresponding Affymetrix probe sets: Gga.10505.1.S1_at (Chicken Array)   Gga.9774.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020453
NCBI entrez gene - 418055     See in Manteia.
RefSeq - XM_015287970
RefSeq - XM_015287979
RefSeq - XM_015287986
RefSeq - XM_015288002
RefSeq - XM_015288005
RefSeq - XM_015288009
RefSeq - XM_015288025
RefSeq - XM_015288028
RefSeq - XM_015288031
RefSeq - XM_015288035
RefSeq - XM_015288046
RefSeq - XM_015288049
RefSeq - XM_015288052
RefSeq - XM_015288060
RefSeq - XM_015288062
RefSeq - XM_015288065
RefSeq - XM_015288075
RefSeq - XM_015288085
RefSeq - XM_015288126
RefSeq - XM_015287962
swissprot - F1NCA4
Ensembl - ENSGALG00000012540
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbfox2ENSDARG00000052182Danio rerio
 O43251ENSG00000100320Homo sapiens
 Q8BP71ENSMUSG00000033565Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBFOX1 / RNA binding fox-1 homolog 1 / Q9JJ43* / Q9NWB1* / RNA binding 1 *ENSGALG0000003432562
RBFOX3 / RNA binding fox-1 homolog 3 / A6NFN3* / Q8BIF2* / RNA binding 3 *ENSGALG0000003288953


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010724 regulation of definitive erythrocyte differentiation IEA
 biological_processGO:0021942 radial glia guided migration of Purkinje cell IEA
 biological_processGO:0030520 intracellular estrogen receptor signaling pathway IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0048813 dendrite morphogenesis IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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