ENSDARG00000040881


Danio rerio

Features
Gene ID: ENSDARG00000040881
  
Biological name :hnrnph1
  
Synonyms : heterogeneous nuclear ribonucleoprotein H1 / hnrnph1
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein F / heterogeneous nuclear ribonucleoprotein H2 / Heteroous nuclear ribonucleoprotein F Heteroous nuclear ribonucleoprotein F, N-terminally processed / Heteroous nuclear ribonucleoprotein H2 Heteroous nuclear ribonucleoprotein H2, N-terminally processed / HNRNPF / HNRNPH2 / Mus musculus heteroous nuclear ribonucleoprotein H1 (Hnrnph1), transcript variant 1, mRNA. / O35737 / P31943 / P52597 / P55795 / P70333 / Q9Z2X1
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 6991142
Gene end: 7014588
  
Corresponding Affymetrix probe sets: Dr.17640.1.A1_at (Zebrafish Array)   NM_205684_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000141886
Ensembl peptide - ENSDARP00000059917
NCBI entrez gene - 402984     See in Manteia.
RefSeq - XM_005169580
RefSeq - XM_021480996
RefSeq - NM_205684
RefSeq - XM_005169581
RefSeq - XM_005169579
RefSeq Peptide - NP_991247
swissprot - Q6P0V0
swissprot - A0A0R4IZE3
ZFIN ID - ZDB-GENE-040426-1856
Ensembl - ENSDARG00000040881
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HNRNPH2ENSGALG00000031120Gallus gallus
 HNRNPFENSG00000169813Homo sapiens
 P31943ENSG00000169045Homo sapiens
 P55795ENSG00000126945Homo sapiens
 HnrnpfENSMUSG00000042079Mus musculus
 O35737ENSMUSG00000007850Mus musculus
 P70333ENSMUSG00000045427Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnph1l / heterogeneous nuclear ribonucleoprotein H1, like / O35737* / Q9Z2X1* / P70333* / P55795* / HNRNPF* / P31943* / P52597* / HNRNPH2* / HNRNPH1* / heterogeneous nuclear ribonucleopro...ENSDARG0000000555185
esrp1 / A1L1G1 / epithelial splicing regulatory protein 1 / Q3US41* / Q6NXG1* / Mus musculus epithelial splicing regulatory protein 1 (Esrp1), transcript variant 3, mRNA.*ENSDARG0000001124530
grsf1 / G-rich RNA sequence binding factor 1 / Q12849* / Q8C5Q4* / G-rich sequence factor 1 *ENSDARG0000005302129
esrp2 / epithelial splicing regulatory protein 2 / Q8K0G8* / Q9H6T0*ENSDARG0000001881426
rbm12 / RNA binding motif protein 12 / Q9NTZ6* / Q8R4X3* / Gm28036* / RNA-binding protein 12 *ENSDARG0000010063623
rbm12b / RNA binding motif protein 12B / Q66JV4* / Q80YR9* / Q8IXT5* / Rbm12b1* / Rbm12b2* / RNA-binding protein 12B-A * / Mus musculus RNA binding motif protein 12 B2 (Rbm12b2), transcript...ENSDARG0000007971721
hnrnph3 / heterogeneous nuclear ribonucleoprotein H3 (2H9) / P31942* / heterogeneous nuclear ribonucleoprotein H3* / Mus musculus heteroous nuclear ribonucleoprotein H3 (Hnrnph3), transcrip...ENSDARG0000003946620
zgc:153215ENSDARG0000005588917


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012996  Zinc finger, CHHC-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000005551 hnrnph1l / heterogeneous nuclear ribonucleoprotein H1, like / O35737* / Q9Z2X1* / P70333* / P55795* / HNRNPF* / P31943* / P52597* / HNRNPH2* / HNRNPH1* / heterogeneous nuclear ribonucleopro...  / complex
 ENSDARG00000040881 hnrnph1 / heterogeneous nuclear ribonucleoprotein H1 / Q9Z2X1* / HNRNPF* / O35737* / P31943* / P52597* / P55795* / P70333* / HNRNPH2* / heterogeneous nuclear ribonucleoprotein F* / heteroge...  / complex






 

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