ENSDARG00000011245


Danio rerio

Features
Gene ID: ENSDARG00000011245
  
Biological name :esrp1
  
Synonyms : A1L1G1 / epithelial splicing regulatory protein 1 / esrp1
  
Possible biological names infered from orthology : Mus musculus epithelial splicing regulatory protein 1 (Esrp1), transcript variant 3, mRNA. / Q3US41 / Q6NXG1
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 26645663
Gene end: 26676685
  
Corresponding Affymetrix probe sets: Dr.13001.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000094207
NCBI entrez gene - 560190     See in Manteia.
RefSeq - NM_001080576
RefSeq - XM_005158027
RefSeq Peptide - NP_001074045
swissprot - A1L1G1
ZFIN ID - ZDB-GENE-070112-1732
Ensembl - ENSDARG00000011245
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ESRP1ENSGALG00000031076Gallus gallus
 ESRP1ENSG00000104413Homo sapiens
 Esrp1ENSMUSG00000040728Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
esrp2 / epithelial splicing regulatory protein 2 / Q8K0G8* / Q9H6T0*ENSDARG0000001881458
hnrnph1l / heterogeneous nuclear ribonucleoprotein H1, like / O35737* / Q9Z2X1* / P70333* / P55795* / HNRNPF* / P31943* / P52597* / HNRNPH2* / HNRNPH1* / heterogeneous nuclear ribonucleopro...ENSDARG0000000555117
hnrnph1 / heterogeneous nuclear ribonucleoprotein H1 / Q9Z2X1* / HNRNPF* / O35737* / P31943* / P52597* / P55795* / P70333* / HNRNPH2* / heterogeneous nuclear ribonucleoprotein F* / heteroge...ENSDARG0000004088117
rbm12 / RNA binding motif protein 12 / Q9NTZ6* / Q8R4X3* / Gm28036* / RNA-binding protein 12 *ENSDARG0000010063614
rbm12b / RNA binding motif protein 12B / Q66JV4* / Q80YR9* / Q8IXT5* / Rbm12b1* / Rbm12b2* / RNA-binding protein 12B-A * / Mus musculus RNA binding motif protein 12 B2 (Rbm12b2), transcript...ENSDARG0000007971713
grsf1 / G-rich RNA sequence binding factor 1 / Q12849* / Q8C5Q4* / G-rich sequence factor 1 *ENSDARG0000005302113
zgc:153215ENSDARG000000558899
hnrnph3 / heterogeneous nuclear ribonucleoprotein H3 (2H9) / P31942* / heterogeneous nuclear ribonucleoprotein H3* / Mus musculus heteroous nuclear ribonucleoprotein H3 (Hnrnph3), transcrip...ENSDARG000000394666


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012337  Ribonuclease H-like superfamily
 IPR013520  Exonuclease, RNase T/DNA polymerase III
 IPR034427  ESRP1, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing ISS
 cellular_componentGO:0005634 nucleus ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding ISS


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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