ENSDARG00000079717


Danio rerio

Features
Gene ID: ENSDARG00000079717
  
Biological name :rbm12b
  
Synonyms : rbm12b / RNA binding motif protein 12B
  
Possible biological names infered from orthology : Mus musculus RNA binding motif protein 12 B2 (Rbm12b2), transcript variant 3, mRNA. / Q66JV4 / Q80YR9 / Q8IXT5 / Rbm12b1 / Rbm12b2 / RNA-binding protein 12B-A
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 16232621
Gene end: 16237860
  
Corresponding Affymetrix probe sets: Dr.15076.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000097607
Ensembl peptide - ENSDARP00000135687
NCBI entrez gene - 334496     See in Manteia.
RefSeq - NM_001290140
RefSeq Peptide - NP_001277069
swissprot - E7F6E2
swissprot - A0A0R4INU6
ZFIN ID - ZDB-GENE-030131-6428
Ensembl - ENSDARG00000079717
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM12BENSGALG00000035129Gallus gallus
 Q8IXT5ENSG00000183808Homo sapiens
 Q66JV4ENSMUSG00000052137Mus musculus
 Q80YR9ENSMUSG00000046667Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm12 / RNA binding motif protein 12 / Q9NTZ6* / Q8R4X3* / Gm28036* / RNA-binding protein 12 *ENSDARG0000010063630
zgc:153215ENSDARG0000005588919
hnrnph1 / heterogeneous nuclear ribonucleoprotein H1 / Q9Z2X1* / HNRNPF* / O35737* / P31943* / P52597* / P55795* / P70333* / HNRNPH2* / heterogeneous nuclear ribonucleoprotein F* / heteroge...ENSDARG0000004088113
esrp1 / A1L1G1 / epithelial splicing regulatory protein 1 / Q3US41* / Q6NXG1* / Mus musculus epithelial splicing regulatory protein 1 (Esrp1), transcript variant 3, mRNA.*ENSDARG0000001124513
hnrnph1l / heterogeneous nuclear ribonucleoprotein H1, like / O35737* / Q9Z2X1* / P70333* / P55795* / HNRNPF* / P31943* / P52597* / HNRNPH2* / HNRNPH1* / heterogeneous nuclear ribonucleopro...ENSDARG0000000555112
esrp2 / epithelial splicing regulatory protein 2 / Q8K0G8* / Q9H6T0*ENSDARG0000001881412
grsf1 / G-rich RNA sequence binding factor 1 / Q12849* / Q8C5Q4* / G-rich sequence factor 1 *ENSDARG0000005302111
hnrnph3 / heterogeneous nuclear ribonucleoprotein H3 (2H9) / P31942* / heterogeneous nuclear ribonucleoprotein H3* / Mus musculus heteroous nuclear ribonucleoprotein H3 (Hnrnph3), transcrip...ENSDARG000000394665


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034588  RBM12B, RNA recognition motif 2
 IPR034858  RBM12B, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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