ENSDARG00000055889


Danio rerio

Features
Gene ID: ENSDARG00000055889
  
Biological name :zgc:153215
  
Synonyms : zgc:153215
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 27561114
Gene end: 27566552
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000072759
Ensembl peptide - ENSDARP00000118499
NCBI entrez gene - 777631     See in Manteia.
RefSeq - NM_001077739
RefSeq Peptide - NP_001071207
swissprot - F1R8L0
swissprot - E9QIR6
ZFIN ID - ZDB-GENE-061103-58
Ensembl - ENSDARG00000055889
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm12 / RNA binding motif protein 12 / Q9NTZ6* / Q8R4X3* / Gm28036* / RNA-binding protein 12 *ENSDARG0000010063627
rbm12b / RNA binding motif protein 12B / Q66JV4* / Q80YR9* / Q8IXT5* / Rbm12b1* / Rbm12b2* / RNA-binding protein 12B-A * / Mus musculus RNA binding motif protein 12 B2 (Rbm12b2), transcript...ENSDARG0000007971725
hnrnph1l / heterogeneous nuclear ribonucleoprotein H1, like / O35737* / Q9Z2X1* / P70333* / P55795* / HNRNPF* / P31943* / P52597* / HNRNPH2* / HNRNPH1* / heterogeneous nuclear ribonucleopro...ENSDARG0000000555113
hnrnph1 / heterogeneous nuclear ribonucleoprotein H1 / Q9Z2X1* / HNRNPF* / O35737* / P31943* / P52597* / P55795* / P70333* / HNRNPH2* / heterogeneous nuclear ribonucleoprotein F* / heteroge...ENSDARG0000004088113
esrp1 / A1L1G1 / epithelial splicing regulatory protein 1 / Q3US41* / Q6NXG1* / Mus musculus epithelial splicing regulatory protein 1 (Esrp1), transcript variant 3, mRNA.*ENSDARG0000001124512
grsf1 / G-rich RNA sequence binding factor 1 / Q12849* / Q8C5Q4* / G-rich sequence factor 1 *ENSDARG0000005302111
esrp2 / epithelial splicing regulatory protein 2 / Q8K0G8* / Q9H6T0*ENSDARG0000001881410
hnrnph3 / heterogeneous nuclear ribonucleoprotein H3 (2H9) / P31942* / heterogeneous nuclear ribonucleoprotein H3* / Mus musculus heteroous nuclear ribonucleoprotein H3 (Hnrnph3), transcrip...ENSDARG000000394666


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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