ENSG00000171867


Homo sapiens

Features
Gene ID: ENSG00000171867
  
Biological name :PRNP
  
Synonyms : P04156 / prion protein / PRNP
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: p13
Gene start: 4686236
Gene end: 4701590
  
Corresponding Affymetrix probe sets: 201300_s_at (Human Genome U133 Plus 2.0 Array)   215707_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000415284
Ensembl peptide - ENSP00000368752
Ensembl peptide - ENSP00000399376
Ensembl peptide - ENSP00000411599
NCBI entrez gene - 5621     See in Manteia.
OMIM - 176640
RefSeq - NM_001271561
RefSeq - NM_000311
RefSeq - NM_001080121
RefSeq - NM_001080122
RefSeq - NM_001080123
RefSeq - NM_183079
RefSeq Peptide - NP_898902
RefSeq Peptide - NP_000302
RefSeq Peptide - NP_001073590
RefSeq Peptide - NP_001073591
RefSeq Peptide - NP_001073592
RefSeq Peptide - NP_001258490
swissprot - A2A2V1
swissprot - P04156
swissprot - Q53YK7
swissprot - X6RKS3
Ensembl - ENSG00000171867
  
Related genetic diseases (OMIM): 137440 - Cerebral amyloid angiopathy, PRNP-related, 137440
  123400 - Creutzfeldt-Jakob disease, 123400
  603218 - Huntington disease-like 1, 603218
  600072 - Insomnia, fatal familial, 600072
  606688 - Prion disease with protracted course, 606688
  245300 - {Kuru, susceptibility to}, 245300
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRNPENSGALG00000000209Gallus gallus
 PrnpENSMUSG00000079037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000817  Prion protein
 IPR022416  Prion/Doppel protein, beta-ribbon domain
 IPR025860  Major prion protein N-terminal domain
 IPR036924  Prion/Doppel beta-ribbon domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001933 negative regulation of protein phosphorylation ISS
 biological_processGO:0006878 cellular copper ion homeostasis NAS
 biological_processGO:0006979 response to oxidative stress ISS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007050 cell cycle arrest IEA
 biological_processGO:0007611 learning or memory ISS
 biological_processGO:0007616 long-term memory TAS
 biological_processGO:0010942 positive regulation of cell death IEA
 biological_processGO:0010955 negative regulation of protein processing TAS
 biological_processGO:0031648 protein destabilization IMP
 biological_processGO:0032147 activation of protein kinase activity IEA
 biological_processGO:0032689 negative regulation of interferon-gamma production ISS
 biological_processGO:0032700 negative regulation of interleukin-17 production ISS
 biological_processGO:0032703 negative regulation of interleukin-2 production ISS
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0035584 calcium-mediated signaling using intracellular calcium source IGI
 biological_processGO:0035690 cellular response to drug IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043086 negative regulation of catalytic activity IEA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity ISS
 biological_processGO:0043525 positive regulation of neuron apoptotic process IMP
 biological_processGO:0046007 negative regulation of activated T cell proliferation ISS
 biological_processGO:0046686 response to cadmium ion IEA
 biological_processGO:0046688 response to copper ion IEA
 biological_processGO:0050730 regulation of peptidyl-tyrosine phosphorylation ISS
 biological_processGO:0050731 positive regulation of peptidyl-tyrosine phosphorylation IDA
 biological_processGO:0050860 negative regulation of T cell receptor signaling pathway ISS
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0061098 positive regulation of protein tyrosine kinase activity IGI
 biological_processGO:0070885 negative regulation of calcineurin-NFAT signaling cascade ISS
 biological_processGO:0071280 cellular response to copper ion IDA
 biological_processGO:0090314 positive regulation of protein targeting to membrane ISS
 biological_processGO:0090647 modulation of age-related behavioral decline ISS
 biological_processGO:0097062 dendritic spine maintenance TAS
 biological_processGO:1900272 negative regulation of long-term synaptic potentiation IEA
 biological_processGO:1901216 positive regulation of neuron death ISS
 biological_processGO:1901379 regulation of potassium ion transmembrane transport IEA
 biological_processGO:1902430 negative regulation of amyloid-beta formation ISS
 biological_processGO:1902938 regulation of intracellular calcium activated chloride channel activity IGI
 biological_processGO:1902951 negative regulation of dendritic spine maintenance ISS
 biological_processGO:1902992 negative regulation of amyloid precursor protein catabolic process ISS
 biological_processGO:1903078 positive regulation of protein localization to plasma membrane IEA
 biological_processGO:1904645 response to amyloid-beta ISS
 biological_processGO:1904646 cellular response to amyloid-beta IGI
 biological_processGO:1905664 regulation of calcium ion import across plasma membrane ISS
 biological_processGO:1990535 neuron projection maintenance ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005783 endoplasmic reticulum ISS
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0014069 postsynaptic density TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016234 inclusion body IMP
 cellular_componentGO:0019898 extrinsic component of membrane TAS
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0031362 anchored component of external side of plasma membrane NAS
 cellular_componentGO:0031965 nuclear membrane IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0045121 membrane raft IMP
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0098794 postsynapse TAS
 cellular_componentGO:0106003 amyloid-beta complex IDA
 molecular_functionGO:0001540 amyloid-beta binding TAS
 molecular_functionGO:0002020 protease binding ISS
 molecular_functionGO:0004871 obsolete signal transducer activity ISS
 molecular_functionGO:0005507 copper ion binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005521 lamin binding IEA
 molecular_functionGO:0005539 glycosaminoglycan binding ISS
 molecular_functionGO:0008017 microtubule binding IDA
 molecular_functionGO:0015631 tubulin binding IDA
 molecular_functionGO:0031802 type 5 metabotropic glutamate receptor binding ISS
 molecular_functionGO:0042802 identical protein binding IMP
 molecular_functionGO:0043008 ATP-dependent protein binding IEA
 molecular_functionGO:0044325 ion channel binding IEA
 molecular_functionGO:0044877 protein-containing complex binding ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051087 chaperone binding IEA
 molecular_functionGO:1903135 cupric ion binding IEA
 molecular_functionGO:1903136 cuprous ion binding IMP


Pathways (from Reactome)
Pathway description
NCAM1 interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000016 Urinary retention 
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 HP:0000298 Mask-like facies 
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 HP:0000505 Impaired vision 
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 HP:0000514 Slow saccades 
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 HP:0000605 Supranuclear gaze palsy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000651 Diplopia "Diplopia is a condition in which a single object is perceived as two images, it is also known as double vision." [HPO:curators]
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000711 Restlessness 
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 HP:0000712 Emotional lability 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000736 Short attention span "Reduced attention span characterized by distractibility and impulsivity but not necessarily satisfying the diagnostic criteria for attention deficit hyperactivity disorder." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0000746 Delusions 
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 HP:0000750 Impaired language development 
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 HP:0000751 Personality changes 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001284 Areflexia 
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 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001300 Parkinsonism 
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 HP:0001310 Dysmetria 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001350 Slurred speech 
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 HP:0001824 Weight loss 
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 HP:0001945 Fever 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002063 Rigidity 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002078 Truncal ataxia 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002134 Abnormality of the basal ganglia "Abnormality of the basal ganglia, which are a group of nuclei (striatum, pallidum substantia nigra, and the subthalamic nucleus) at the base of the forebrain that are connected to the cerebral cortex, the thalamus, and other areas. The basal ganglia subserve motor functions that are distinct from those of the pyramidal (corticospinal) tract, for which reason neurologic abnormalities caused by lesions to the basal ganglia are often referred to as extrapyramidal." [HPO:curators]
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 HP:0002171 Gliosis 
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 HP:0002185 Neurofibrillary tangles 
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 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
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 HP:0002283 Diffuse brain atrophy 
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 HP:0002311 Incoordination 
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 HP:0002312 Clumsiness 
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 HP:0002317 Unsteady gait 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002359 Frequent falls 
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002375 Hypokinesia 
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 HP:0002381 Aphasia 
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 HP:0002401 Stroke-like episodes 
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 HP:0002446 Astrocytosis 
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 HP:0002459 Dysautonomia 
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 HP:0002464 Spastic dysarthria 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0002533 Abnormal posturing 
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 HP:0002549 Deficit in phonologic short-term memory 
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 HP:0002922 Increased CSF protein 
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 HP:0003043 Abnormality of the shoulder "An abnormality of the shoulder, which is defined as the structures surrounding the shoulder joint where the humerus attaches to the scapula." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003678 Rapidly progressive 
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 HP:0003812 Phenotypic variability 
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 HP:0005327 Loss of facial expression 
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 HP:0006801 Hyperactive deep tendon reflexes 
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 HP:0006943 Diffuse spongiform leukoencephalopathy 
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 HP:0006961 Jerky head movements 
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 HP:0006999 Cell loss and gliosis in the basal ganglia 
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 HP:0007009 Central nervous system degeneration 
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 HP:0007010 Poor fine motor coordination 
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 HP:0007017 Progressive forgetfulness 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007076 Extrapyramidal muscular rigidity 
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 HP:0007158 Progressive extrapyramidal rigidity 
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 HP:0007183 Hyperintense lesions in the basal ganglia on mri 
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 HP:0007340 Lower limb muscle weakness "Weakness of the muscles of the legs." [HPO:curators]
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 HP:0007686 Abnormal pupillary function 
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 HP:0007772 Impaired smooth pursuit in adult patients 
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 HP:0008003 Jerky ocular pursuit movements 
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 HP:0010542 Vestibular nystagmus "Nystagmus due to disturbance of the vestibular system; eye movements are rhythmic, with slow and fast components." [HPO:curators]
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 HP:0010846 EEG: persistent abnormal rhythmic activity 
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 HP:0011099 Spastic hemiplegia "Unilateral paralysis with spasticity of the affected muscles and increased tendon reflexes." [HPO:probinson]
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 HP:0011458 Abdominal symptom 
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0012672 Akinetic mutism "Akinetic mutism is essentially characterized by a total absence of spontaneous behavior and speech occurring in the presence of preserved visual tracking." [HPO:probinson]
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 HP:0025152 Poor visual behavior for age "Lack of visual responsiveness or decrease in visual capabilities suggesting a lack of visual responsiveness or decrease in visual capabilities in an infant or young child in which visual behvior fails to meet normal developmental milestones." []
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 HP:0030223 Perseveration "Perseveration can be defined as the contextually inappropriate and unintentional repetition of a response or behavioral unit. In other words, the observed repetitiveness does not meet the demands of the situation, is not the product of deliberation, and may even unfold despite counterintention. Perseveration can therefore be differentiated from goal-directed and intentional forms of repetition, such as linguistic redundancies designed to enhance communicative or poetic impact." [HPO:probinson, pmid:9050113]
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 HP:0040201 Simultanapraxia "A subset of motor impersistence, defined as the inability to perform more than two of the simple voluntary acts simultaneously, such as closing the eyes and protruding the tongue." [PhenoTips:CHum]
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 HP:0040264 Jaw pain 
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 HP:0100256 Senile plaques "Senile plaques are extracellular deposits of amyloid in the gray matter of the brain." [HPO:sdoelken]
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 HP:0100292 Amyloidosis of peripheral nerves "The presence of `amyloid deposition` (MPATH:34) in the nerves of the `peripheral nervous system` (FMA:9903)." [HPO:probinson]
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 HP:0100661 Trigeminal neuralgia "A neuropathic disorder characterized by episodes of intense pain in the face, originating from the trigeminal nerve. One, two, or all three branches of the nerve may be affected." [HPO:sdoelken]
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 HP:0100785 Insomnia 
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 HP:0100786 Hypersomnia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000149294 NCAM1 / P13591 / neural cell adhesion molecule 1  / reaction / complex






 

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