ENSG00000172062


Homo sapiens

Features
Gene ID: ENSG00000172062
  
Biological name :SMN1
  
Synonyms : Q16637 / SMN1 / survival of motor neuron 1, telomeric
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q13.2
Gene start: 70925030
Gene end: 70953942
  
Corresponding Affymetrix probe sets: 203852_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428128
Ensembl peptide - ENSP00000424926
Ensembl peptide - ENSP00000430657
Ensembl peptide - ENSP00000486539
Ensembl peptide - ENSP00000305857
Ensembl peptide - ENSP00000370083
Ensembl peptide - ENSP00000422679
Ensembl peptide - ENSP00000423298
NCBI entrez gene - 6606     See in Manteia.
OMIM - 600354
RefSeq - XM_017009786
RefSeq - NM_000344
RefSeq - NM_001297715
RefSeq - NM_022874
RefSeq - XM_011543596
RefSeq - XM_011543597
RefSeq - XM_011543598
RefSeq Peptide - NP_075012
RefSeq Peptide - NP_001284644
RefSeq Peptide - NP_000335
swissprot - B4DP61
swissprot - Q16637
swissprot - E7EQZ4
swissprot - H0YBZ9
Ensembl - ENSG00000172062
  
Related genetic diseases (OMIM): 253300 - Spinal muscular atrophy-1, 253300
  253400 - Spinal muscular atrophy-3, 253400
  253550 - Spinal muscular atrophy-2, 253550
  271150 - Spinal muscular atrophy-4, 271150
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smn1ENSDARG00000018494Danio rerio
 SMNENSGALG00000002430Gallus gallus
 Smn1ENSMUSG00000021645Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMN2 / Q16637 / survival of motor neuron 2, centromericENSG00000205571100


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR010304  Survival motor neuron


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly NAS
 biological_processGO:0000387 spliceosomal snRNP assembly TAS
 biological_processGO:0006353 DNA-templated transcription, termination IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0051170 import into nucleus TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0030018 Z disc IEA
 cellular_componentGO:0032797 SMN complex IDA
 cellular_componentGO:0034719 SMN-Sm protein complex IDA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IDA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0097504 Gemini of coiled bodies IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
snRNP Assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001308 Tongue fasciculations 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002378 Hand tremor 
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 HP:0002398 Degeneration of anterior horn cells 
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 HP:0002522 Areflexia in lower limbs 
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 HP:0002878 Early respiratory failure 
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 HP:0003394 Muscle cramps 
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 HP:0003445 EMG shows neuropathic changes 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0007126 Proximal amyotrophy "Amyotrophy (muscular atrophy) affecting the proximal musculature." [HPO:curators]
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 HP:0007269 Spinal muscular atrophy "Muscular weakness and atrophy related to loss of the motor neurons of the spinal cord and brainstem." [HPO:curators]
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 HP:0007289 Limb fasciculations "Fasciculations affecting the musculature of the arms and legs." [HPO:curators]
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 HP:0008994 Proximal muscle weakness in lower limbs "A lack of strength of the proximal muscles of the legs." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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