ENSGALG00000002430


Gallus gallus

Features
Gene ID: ENSGALG00000002430
  
Biological name :SMN
  
Synonyms : SMN
  
Possible biological names infered from orthology : P97801 / Q16637 / SMN1 / SMN2 / survival motor neuron 1 / survival of motor neuron 1, telomeric / survival of motor neuron 2, centromeric
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 73033082
Gene end: 73038590
  
Corresponding Affymetrix probe sets: Gga.3961.1.S1_at (Chicken Array)   Gga.3961.1.S2_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058983
Ensembl peptide - ENSGALP00000003813
Ensembl peptide - ENSGALP00000043987
NCBI entrez gene - 374025     See in Manteia.
RefSeq - XM_015280582
RefSeq - NM_204199
RefSeq - XM_015280581
RefSeq Peptide - NP_989530
swissprot - Q98SU9
swissprot - F6QSX6
swissprot - A0A1L1RJQ6
Ensembl - ENSGALG00000002430
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smn1ENSDARG00000018494Danio rerio
 SMN1ENSG00000172062Homo sapiens
 SMN2ENSG00000205571Homo sapiens
 Smn1ENSMUSG00000021645Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR010304  Survival motor neuron


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007019 microtubule depolymerization IEA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0010975 regulation of neuron projection development IEA
 biological_processGO:0033120 positive regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
snRNP Assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr