ENSG00000205571


Homo sapiens

Features
Gene ID: ENSG00000205571
  
Biological name :SMN2
  
Synonyms : Q16637 / SMN2 / survival of motor neuron 2, centromeric
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q13.2
Gene start: 70049612
Gene end: 70078522
  
Corresponding Affymetrix probe sets: 203852_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475331
Ensembl peptide - ENSP00000479279
Ensembl peptide - ENSP00000424799
Ensembl peptide - ENSP00000475824
Ensembl peptide - ENSP00000492675
Ensembl peptide - ENSP00000486268
Ensembl peptide - ENSP00000486152
Ensembl peptide - ENSP00000370117
Ensembl peptide - ENSP00000370118
Ensembl peptide - ENSP00000370119
Ensembl peptide - ENSP00000424282
NCBI entrez gene - 6606     See in Manteia.
NCBI entrez gene - 6607     See in Manteia.
OMIM - 600354
OMIM - 601627
RefSeq - XM_011543601
RefSeq - XM_011543602
RefSeq - XM_011543600
RefSeq - XM_011543599
RefSeq - NM_017411
RefSeq - NM_022875
RefSeq - NM_022876
RefSeq - NM_022877
RefSeq - XM_017009787
RefSeq - XM_011543603
RefSeq Peptide - NP_075014
RefSeq Peptide - NP_059107
RefSeq Peptide - NP_075013
RefSeq Peptide - NP_075015
swissprot - U3KPX7
swissprot - Q16637
swissprot - E7EQZ4
swissprot - H0YBZ9
swissprot - A0A1W2PRV5
swissprot - B4DP61
Ensembl - ENSG00000205571
  
Related genetic diseases (OMIM): 253400 - {Spinal muscular atrophy, type III, modifier of}, 253400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smn1ENSDARG00000018494Danio rerio
 SMNENSGALG00000002430Gallus gallus
 Smn1ENSMUSG00000021645Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMN1 / Q16637 / survival of motor neuron 1, telomericENSG00000172062100


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR010304  Survival motor neuron


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly NAS
 biological_processGO:0000387 spliceosomal snRNP assembly TAS
 biological_processGO:0006353 DNA-templated transcription, termination IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0051170 import into nucleus TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0030018 Z disc IEA
 cellular_componentGO:0032797 SMN complex IDA
 cellular_componentGO:0034719 SMN-Sm protein complex IDA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IDA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0097504 Gemini of coiled bodies IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001308 Tongue fasciculations 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002378 Hand tremor 
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 HP:0002398 Degeneration of anterior horn cells 
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 HP:0002522 Areflexia in lower limbs 
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 HP:0002878 Early respiratory failure 
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 HP:0003394 Muscle cramps 
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 HP:0003445 EMG shows neuropathic changes 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0007126 Proximal amyotrophy "Amyotrophy (muscular atrophy) affecting the proximal musculature." [HPO:curators]
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 HP:0007269 Spinal muscular atrophy "Muscular weakness and atrophy related to loss of the motor neurons of the spinal cord and brainstem." [HPO:curators]
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 HP:0007289 Limb fasciculations "Fasciculations affecting the musculature of the arms and legs." [HPO:curators]
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 HP:0008994 Proximal muscle weakness in lower limbs "A lack of strength of the proximal muscles of the legs." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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