ENSG00000172409


Homo sapiens

Features
Gene ID: ENSG00000172409
  
Biological name :CLP1
  
Synonyms : cleavage and polyadenylation factor I subunit 1 / CLP1 / Q92989
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q12.1
Gene start: 57648992
Gene end: 57661868
  
Corresponding Affymetrix probe sets: 204370_at (Human Genome U133 Plus 2.0 Array)   229496_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000431744
Ensembl peptide - ENSP00000436066
Ensembl peptide - ENSP00000435287
Ensembl peptide - ENSP00000434995
Ensembl peptide - ENSP00000433406
Ensembl peptide - ENSP00000304704
NCBI entrez gene - 10978     See in Manteia.
OMIM - 608757
RefSeq - NM_006831
RefSeq - NM_001142597
RefSeq Peptide - NP_001136069
RefSeq Peptide - NP_006822
swissprot - Q92989
swissprot - E9PKV5
swissprot - E9PJM4
swissprot - E9PL17
Ensembl - ENSG00000172409
  
Related genetic diseases (OMIM): 615803 - Pontocerebellar hypoplasia, type 10, 615803
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clp1ENSDARG00000063663Danio rerio
 CLP1ENSGALG00000007370Gallus gallus
 Clp1ENSMUSG00000027079Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010655  Pre-mRNA cleavage complex subunit Clp1, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR028606  Polyribonucleotide 5-hydroxyl-kinase Clp1
 IPR032319  Polyribonucleotide 5"-hydroxyl-kinase Clp1, P-loop domain
 IPR032324  Clp1, N-terminal beta-sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006379 mRNA cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0021695 cerebellar cortex development IMP
 biological_processGO:0030423 targeting of mRNA for destruction involved in RNA interference IMP
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0035087 siRNA loading onto RISC involved in RNA interference IDA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005849 mRNA cleavage factor complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding TAS
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046404 ATP-dependent polydeoxyribonucleotide 5"-hydroxyl-kinase activity IEA
 molecular_functionGO:0051733 polydeoxyribonucleotide kinase activity IDA
 molecular_functionGO:0051736 ATP-dependent polyribonucleotide 5"-hydroxyl-kinase activity IMP


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
tRNA processing in the nucleus
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000219 Thin upper lip 
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000565 Esotropia 
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 HP:0000637 Wide palpebral fissures 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000817 Poor eye contact 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001344 Absent speech development 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002553 Arched eyebrows 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003577 Onset at birth 
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 HP:0009879 Cortical gyral simplification "An abnormal reduction of the number and complexity of the pattern of gyrations of the cerebral cortex." [HPO:curators]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000165494 PCF11 / O94913 / PCF11 cleavage and polyadenylation factor subunit  / complex
 ENSG00000167005 NUDT21 / O43809 / nudix hydrolase 21  / complex
 ENSG00000149532 CPSF7 / Q8N684 / cleavage and polyadenylation specific factor 7  / complex






 

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