ENSG00000174780


Homo sapiens

Features
Gene ID: ENSG00000174780
  
Biological name :SRP72
  
Synonyms : O76094 / signal recognition particle 72 / SRP72
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q12
Gene start: 56467336
Gene end: 56503681
  
Corresponding Affymetrix probe sets: 208095_s_at (Human Genome U133 Plus 2.0 Array)   208263_at (Human Genome U133 Plus 2.0 Array)   208800_at (Human Genome U133 Plus 2.0 Array)   208801_at (Human Genome U133 Plus 2.0 Array)   208802_at (Human Genome U133 Plus 2.0 Array)   208803_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000342181
Ensembl peptide - ENSP00000425190
Ensembl peptide - ENSP00000473576
Ensembl peptide - ENSP00000495128
Ensembl peptide - ENSP00000424576
NCBI entrez gene - 6731     See in Manteia.
OMIM - 602122
RefSeq - XM_005265765
RefSeq - NM_001267722
RefSeq - NM_006947
RefSeq Peptide - NP_001254651
RefSeq Peptide - NP_008878
swissprot - O76094
swissprot - R4GNC1
swissprot - V9HWK0
swissprot - D6RDY6
Ensembl - ENSG00000174780
  
Related genetic diseases (OMIM): 614675 - Bone marrow failure syndrome 1, 614675
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srp72ENSDARG00000014139Danio rerio
 SRP72ENSGALG00000011403Gallus gallus
 Srp72ENSMUSG00000036323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013699  Signal recognition particle, SRP72 subunit, RNA-binding
 IPR019734  Tetratricopeptide repeat
 IPR026270  Signal recognition particle, SRP72 subunit
 IPR031545  Putative TPR-like repeat
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA
 biological_processGO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation IBA
 biological_processGO:0042493 response to drug IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005786 signal recognition particle, endoplasmic reticulum targeting IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0048500 signal recognition particle IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005047 signal recognition particle binding IPI
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008312 7S RNA binding IEA
 molecular_functionGO:0030911 TPR domain binding IPI
 molecular_functionGO:0043022 ribosome binding IMP


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0001915 Aplastic anemia 
Show

 HP:0002863 Myelodysplasia 
Show

 HP:0005528 Bone marrow hypoplasia 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr