ENSG00000179954


Homo sapiens

Features
Gene ID: ENSG00000179954
  
Biological name :SSC5D
  
Synonyms : A1L4H1 / scavenger receptor cysteine rich family member with 5 domains / SSC5D
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.42
Gene start: 55488404
Gene end: 55519098
  
Corresponding Affymetrix probe sets: 230228_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000467252
Ensembl peptide - ENSP00000374274
Ensembl peptide - ENSP00000467434
Ensembl peptide - ENSP00000470226
NCBI entrez gene - 284297     See in Manteia.
RefSeq - NM_001195267
RefSeq - NM_001144950
RefSeq Peptide - NP_001182196
RefSeq Peptide - NP_001138422
swissprot - K7EPL3
swissprot - A1L4H1
swissprot - M0QZ17
Ensembl - ENSG00000179954
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Ssc5dENSMUSG00000035279Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DMBT1 / Q9UGM3 / deleted in malignant brain tumors 1ENSG0000018790824
Q9NR16 / CD163L1 / CD163 molecule like 1ENSG0000017767518
CD163 / Q86VB7 / CD163 moleculeENSG0000017757518
Q4G0T1 / SCART1 / scavenger receptor family member expressed on T cells 1ENSG0000021427918
P56730 / PRSS12 / serine protease 12ENSG0000016409915
SSC4D / Q8WTU2 / scavenger receptor cysteine rich family member with 4 domainsENSG0000014670015
CD5L / O43866 / CD5 molecule likeENSG0000007375410


Protein motifs (from Interpro)
Interpro ID Name
 IPR001190  SRCR domain
 IPR017448  SRCR-like domain
 IPR036772  SRCR-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0006952 defense response IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0042494 detection of bacterial lipoprotein IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0050829 defense response to Gram-negative bacterium IEA
 biological_processGO:0050830 defense response to Gram-positive bacterium IEA
 biological_processGO:2000482 regulation of interleukin-8 secretion IEA
 biological_processGO:2000483 negative regulation of interleukin-8 secretion IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0001968 fibronectin binding IEA
 molecular_functionGO:0005044 scavenger receptor activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043236 laminin binding IEA
 molecular_functionGO:0050840 extracellular matrix binding IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class B Receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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