ENSMUSG00000035279


Mus musculus

Features
Gene ID: ENSMUSG00000035279
  
Biological name :Ssc5d
  
Synonyms : Q8BV57 / Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D / Ssc5d
  
Possible biological names infered from orthology : A1L4H1 / scavenger receptor cysteine rich family member with 5 domains
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A1
Gene start: 4925785
Gene end: 4944826
  
Corresponding Affymetrix probe sets: 10549733 (MoGene1.0st)   1439529_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000052126
NCBI entrez gene - 269855     See in Manteia.
MGI - MGI:3606211
RefSeq - NM_173008
RefSeq - XM_006540022
RefSeq Peptide - NP_766596
swissprot - Q8BV57
Ensembl - ENSMUSG00000035279
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSC5DENSG00000179954Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Dmbt1 / Mus musculus deleted in malignant brain tumors 1 (Dmbt1), transcript variant 1, mRNA. / Q9UGM3* / deleted in malignant brain tumors 1*ENSMUSG0000004751721
Cd163l1 / CD163 molecule-like 1 / Q4G0T1* / SCART1* / scavenger receptor family member expressed on T cells 1*ENSMUSG0000002546116
5830411N06Rik / RIKEN cDNA 5830411N06 gene / Q4G0T1* / SCART1* / scavenger receptor family member expressed on T cells 1*ENSMUSG0000005467216
Cd163 / Q2VLH6 / Scavenger receptor cysteine-rich type 1 protein M130 Soluble CD163 / Q86VB7* / CD163 molecule*ENSMUSG0000000884516
Ssc4d / A1L0T3 / scavenger receptor cysteine rich family, 4 domains / Q8WTU2* / scavenger receptor cysteine rich family member with 4 domains*ENSMUSG0000002969915
O08762 / Prss12 / protease, serine 12 neurotrypsin (motopsin) / P56730* / serine protease 12*ENSMUSG0000002797813
Cd5l / Q9QWK4 / CD5 antigen-like / O43866* / CD5 molecule like*ENSMUSG0000001585411
Q8BZE1 / 5430419D17Rik / Putative DMBT1-like protein ENSMUSG0000000620410


Protein motifs (from Interpro)
Interpro ID Name
 IPR001190  SRCR domain
 IPR017448  SRCR-like domain
 IPR036772  SRCR-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0006952 defense response IDA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0042494 detection of bacterial lipoprotein IDA
 biological_processGO:0045087 innate immune response NAS
 biological_processGO:0050829 defense response to Gram-negative bacterium IDA
 biological_processGO:0050830 defense response to Gram-positive bacterium IDA
 biological_processGO:2000482 regulation of interleukin-8 secretion IDA
 biological_processGO:2000483 negative regulation of interleukin-8 secretion IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031012 extracellular matrix IDA
 molecular_functionGO:0001968 fibronectin binding IDA
 molecular_functionGO:0005044 scavenger receptor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043236 laminin binding IDA
 molecular_functionGO:0050840 extracellular matrix binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr