ENSG00000183010


Homo sapiens

Features
Gene ID: ENSG00000183010
  
Biological name :PYCR1
  
Synonyms : P32322 / PYCR1 / pyrroline-5-carboxylate reductase 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q25.3
Gene start: 81932384
Gene end: 81942412
  
Corresponding Affymetrix probe sets: 202148_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464440
Ensembl peptide - ENSP00000464098
Ensembl peptide - ENSP00000479793
Ensembl peptide - ENSP00000485679
Ensembl peptide - ENSP00000328858
Ensembl peptide - ENSP00000336579
Ensembl peptide - ENSP00000384949
Ensembl peptide - ENSP00000385483
Ensembl peptide - ENSP00000386002
Ensembl peptide - ENSP00000462398
Ensembl peptide - ENSP00000462892
Ensembl peptide - ENSP00000463225
Ensembl peptide - ENSP00000463226
Ensembl peptide - ENSP00000463342
Ensembl peptide - ENSP00000463343
Ensembl peptide - ENSP00000463352
Ensembl peptide - ENSP00000463601
NCBI entrez gene - 5831     See in Manteia.
OMIM - 179035
RefSeq - NM_153824
RefSeq - NM_001282279
RefSeq - NM_001282280
RefSeq - NM_001282281
RefSeq - NM_001330523
RefSeq - NM_006907
RefSeq - XM_005256381
RefSeq - XM_011523583
RefSeq - XM_011523584
RefSeq - XM_011523585
RefSeq - XM_017024909
RefSeq Peptide - NP_001269208
RefSeq Peptide - NP_001269209
RefSeq Peptide - NP_008838
RefSeq Peptide - NP_722546
RefSeq Peptide - NP_001269210
RefSeq Peptide - NP_001317452
swissprot - J3KSA9
swissprot - J3KTA8
swissprot - J3QKT3
swissprot - J3QKT4
swissprot - J3QL23
swissprot - J3QL24
swissprot - J3QL32
swissprot - J3QR88
swissprot - J3QLK9
swissprot - J3QRZ0
swissprot - P32322
swissprot - A0A024R8U9
swissprot - E2QRB3
swissprot - J3KQ22
Ensembl - ENSG00000183010
  
Related genetic diseases (OMIM): 612940 - Cutis laxa, autosomal recessive, type IIB, 612940
  614438 - Cutis laxa, autosomal recessive, type IIIB, 614438
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pycr1aENSDARG00000102254Danio rerio
 pycr1bENSDARG00000098639Danio rerio
 PYCR1ENSGALG00000007300Gallus gallus
 Pycr1ENSMUSG00000025140Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PYCR2 / Q96C36 / pyrroline-5-carboxylate reductase 2ENSG0000014381178
AL117348.2ENSG0000025583550
PYCR3 / Q53H96 / pyrroline-5-carboxylate reductase 3ENSG0000010452435


Protein motifs (from Interpro)
Interpro ID Name
 IPR000304  Pyrroline-5-carboxylate reductase
 IPR008927  6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily
 IPR028939  Pyrroline-5-carboxylate reductase, catalytic, N-terminal
 IPR029036  Pyrroline-5-carboxylate reductase, dimerisation domain
 IPR036291  NAD(P)-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006561 proline biosynthetic process TAS
 biological_processGO:0008652 cellular amino acid biosynthetic process TAS
 biological_processGO:0034599 cellular response to oxidative stress IMP
 biological_processGO:0051881 regulation of mitochondrial membrane potential IMP
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0055129 L-proline biosynthetic process IEA
 biological_processGO:1903206 negative regulation of hydrogen peroxide-induced cell death IMP
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0004735 pyrroline-5-carboxylate reductase activity EXP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Amino acid synthesis and interconversion (transamination)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000238 Hydrocephalus 
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000325 Triangular facies 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000411 Protruding ears 
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 HP:0000418 Pinched nose 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000490 Deep set eyes 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000592 Blue sclerae 
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 HP:0000601 Hypotelorism 
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 HP:0000750 Impaired language development 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000973 Cutis laxa 
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 HP:0000974 Hyperextensible skin 
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 HP:0001015 Prominent superficial veins 
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 HP:0001087 Congenital glaucoma 
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001582 Loose, redundant skin 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001883 Talipes 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002213 Fine hair 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002953 Vertebral compression fractures 
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 HP:0002987 Elbow contractures 
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0004568 Beaking of vertebral bodies 
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 HP:0004586 Biconcave vertebral bodies 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006487 Bowing of the long bones 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007495 Prematurely aged appearance 
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 HP:0008070 Sparse hair 
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 HP:0010648 Dermal translucency "An abnormally increased ability of the skin to permit light to pass through (translucency) such that subcutaneous structures such as veins display an increased degree of visibility." [HPO:curator]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0100790 Hernia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000183010 PYCR1 / P32322 / pyrroline-5-carboxylate reductase 1  / complex






 

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contact: otassy@igbmc.fr