ENSG00000184374


Homo sapiens

Features
Gene ID: ENSG00000184374
  
Biological name :COLEC10
  
Synonyms : COLEC10 / collectin subfamily member 10 / Q9Y6Z7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: q24.12
Gene start: 118995452
Gene end: 119106582
  
Corresponding Affymetrix probe sets: 207420_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000332723
NCBI entrez gene - 10584     See in Manteia.
OMIM - 607620
RefSeq - XM_005250756
RefSeq - NM_001324095
RefSeq - NM_006438
RefSeq Peptide - NP_001311024
RefSeq Peptide - NP_006429
swissprot - Q9Y6Z7
swissprot - A0A024R9J3
Ensembl - ENSG00000184374
  
Related genetic diseases (OMIM): 248340 - 3MC syndrome 3, 248340
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COLEC10ENSDARG00000104752Danio rerio
 Q2LK95ENSGALG00000033144Gallus gallus
 Q8CF98ENSMUSG00000038591Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BWP8 / COLEC11 / collectin subfamily member 11ENSG0000011800447
SFTPD / P35247 / surfactant protein DENSG0000013366128
MBL2 / P11226 / mannose binding lectin 2ENSG0000016547127
Q8IWL2 / SFTPA1 / surfactant protein A1ENSG0000012285226
Q8IWL1 / SFTPA2 / surfactant protein A2ENSG0000018530326


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR008160  Collagen triple helix repeat
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site
 IPR033990  Collectin, C-type lectin-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001867 complement activation, lectin pathway TAS
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006956 complement activation TAS
 biological_processGO:0050918 positive chemotaxis IEA
 biological_processGO:1904888 cranial skeletal system development IMP
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 molecular_functionGO:0004252 serine-type endopeptidase activity TAS
 molecular_functionGO:0005537 mannose binding TAS
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0042056 chemoattractant activity IDA


Pathways (from Reactome)
Pathway description
Lectin pathway of complement activation
Initial triggering of complement


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000048 Bifid scrotum "Separation of the two halves of the scrotum, whereby commonly the 2 halves of the scrotum meet above the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000316 Hypertelorism 
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000537 Epicanthus inversus 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000593 Abnormality of the anterior chamber "Abnormality of the anterior chamber, which is the space in the eye that is behind the cornea and in front of the iris." [HPO:curators]
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 HP:0000808 Penoscrotal hypospadias "A severe form of hypospadias in which the urethral opening is located at the junction of the penis and scrotum." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001540 Diastasis recti 
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 HP:0002006 Facial cleft 
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 HP:0002265 Large fleshy ears 
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 HP:0002553 Arched eyebrows 
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 HP:0002558 Supernumerary nipples 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002825 Caudal appendage "The presence of a tail-like skin appendage located adjacent to the sacrum." [HPO:probinson]
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 HP:0002827 Dislocated hips 
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 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0003307 Hyperlordosis 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005105 Abnormal nasal morphology 
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 HP:0006394 Limited pronation/supination of forearm "A limitation of the ability to place the forearm in a position such that the palm faces anteriorly (supination) and to place the forearm in a position such that the palm faces posteriorly (pronation)." [HPO:curators]
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 HP:0008689 Bilateral cryptorchidism 
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 HP:0008897 Growth retardation, progressive 
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0040016 Prominent coccyx 
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 HP:0100258 Preaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the thumb or great toe." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000009724 MASP2 / O00187 / mannan binding lectin serine peptidase 2  / complex
 ENSG00000127241 MASP1 / P48740 / mannan binding lectin serine peptidase 1  / complex
 ENSG00000166278 C2 / P06681 / complement C2  / reaction
 ENSG00000224389 C4B / P0C0L5 / complement C4B (Chido blood group)  / reaction
 ENSG00000244731 C4A / P0C0L4 / complement C4A (Rodgers blood group)  / reaction
 ENSG00000118004 Q9BWP8 / COLEC11 / collectin subfamily member 11  / complex






 

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