ENSG00000118004


Homo sapiens

Features
Gene ID: ENSG00000118004
  
Biological name :COLEC11
  
Synonyms : COLEC11 / collectin subfamily member 11 / Q9BWP8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p25.3
Gene start: 3594832
Gene end: 3644644
  
Corresponding Affymetrix probe sets: 219873_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410919
Ensembl peptide - ENSP00000393167
Ensembl peptide - ENSP00000411770
Ensembl peptide - ENSP00000236693
Ensembl peptide - ENSP00000339168
Ensembl peptide - ENSP00000371494
Ensembl peptide - ENSP00000384882
Ensembl peptide - ENSP00000385130
Ensembl peptide - ENSP00000385653
Ensembl peptide - ENSP00000385827
NCBI entrez gene - 78989     See in Manteia.
OMIM - 612502
RefSeq - XM_006711897
RefSeq - NM_001255982
RefSeq - NM_001255983
RefSeq - NM_001255984
RefSeq - NM_001255985
RefSeq - NM_001255986
RefSeq - NM_001255987
RefSeq - NM_001255988
RefSeq - NM_001255989
RefSeq - NM_024027
RefSeq - NM_199235
RefSeq - XM_005263853
RefSeq Peptide - NP_001242911
RefSeq Peptide - NP_001242912
RefSeq Peptide - NP_001242918
RefSeq Peptide - NP_076932
RefSeq Peptide - NP_954705
RefSeq Peptide - NP_001242913
RefSeq Peptide - NP_001242914
RefSeq Peptide - NP_001242915
RefSeq Peptide - NP_001242916
RefSeq Peptide - NP_001242917
swissprot - F8WB29
swissprot - Q9BWP8
swissprot - C9JWT5
Ensembl - ENSG00000118004
  
Related genetic diseases (OMIM): 265050 - 3MC syndrome 2, 265050
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 colec11ENSDARG00000013266Danio rerio
 COLEC11ENSGALG00000037309Gallus gallus
 Colec11ENSMUSG00000036655Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y6Z7 / COLEC10 / collectin subfamily member 10ENSG0000018437445
SFTPD / P35247 / surfactant protein DENSG0000013366128
MBL2 / P11226 / mannose binding lectin 2ENSG0000016547126
Q8IWL1 / SFTPA2 / surfactant protein A2ENSG0000018530324
Q8IWL2 / SFTPA1 / surfactant protein A1ENSG0000012285224


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR008160  Collagen triple helix repeat
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site
 IPR033990  Collectin, C-type lectin-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001867 complement activation, lectin pathway TAS
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006898 receptor-mediated endocytosis TAS
 biological_processGO:0006956 complement activation TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0032502 developmental process ISS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 molecular_functionGO:0004252 serine-type endopeptidase activity TAS
 molecular_functionGO:0005537 mannose binding IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
Lectin pathway of complement activation
Initial triggering of complement
Scavenging by Class A Receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000289 Wide philtrum 
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000437 Flat nasal tip 
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 HP:0000473 Torticollis 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000537 Epicanthus inversus 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000593 Abnormality of the anterior chamber "Abnormality of the anterior chamber, which is the space in the eye that is behind the cornea and in front of the iris." [HPO:curators]
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 HP:0000925 Abnormality of the vertebral column "Any abnormality of the spine (vertebral column)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001540 Diastasis recti 
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 HP:0002265 Large fleshy ears 
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 HP:0002553 Arched eyebrows 
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 HP:0002558 Supernumerary nipples 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002825 Caudal appendage "The presence of a tail-like skin appendage located adjacent to the sacrum." [HPO:probinson]
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 HP:0002827 Dislocated hips 
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 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
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 HP:0002996 Limited elbow movement 
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0003307 Hyperlordosis 
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 HP:0003468 Abnormalities of the vertebrae 
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 HP:0005105 Abnormal nasal morphology 
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 HP:0005243 Partial abdominal muscle agenesis 
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 HP:0006394 Limited pronation/supination of forearm "A limitation of the ability to place the forearm in a position such that the palm faces anteriorly (supination) and to place the forearm in a position such that the palm faces posteriorly (pronation)." [HPO:curators]
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 HP:0008689 Bilateral cryptorchidism 
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 HP:0008897 Growth retardation, progressive 
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 HP:0009004 Muscle hypoplasia "Underdevelopment of the musculature." [HPO:curators]
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 HP:0010759 Prominent premaxilla "Prominent aspect of the `premaxilla` (FMA:76869)." [HPO:sdoelken]
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 HP:0040016 Prominent coccyx 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000127241 MASP1 / P48740 / mannan binding lectin serine peptidase 1  / complex
 ENSG00000224389 C4B / P0C0L5 / complement C4B (Chido blood group)  / reaction
 ENSG00000118004 Q9BWP8 / COLEC11 / collectin subfamily member 11  / complex
 ENSG00000009724 MASP2 / O00187 / mannan binding lectin serine peptidase 2  / complex
 ENSG00000244731 C4A / P0C0L4 / complement C4A (Rodgers blood group)  / reaction
 ENSG00000166278 C2 / P06681 / complement C2  / reaction
 ENSG00000184374 Q9Y6Z7 / COLEC10 / collectin subfamily member 10  / complex






 

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