ENSG00000186104


Homo sapiens

Features
Gene ID: ENSG00000186104
  
Biological name :CYP2R1
  
Synonyms : CYP2R1 / cytochrome P450 family 2 subfamily R member 1 / Q6VVX0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p15.2
Gene start: 14877440
Gene end: 14892252
  
Corresponding Affymetrix probe sets: 207786_at (Human Genome U133 Plus 2.0 Array)   227109_at (Human Genome U133 Plus 2.0 Array)   239181_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000465097
Ensembl peptide - ENSP00000435484
Ensembl peptide - ENSP00000466060
Ensembl peptide - ENSP00000466604
Ensembl peptide - ENSP00000334592
Ensembl peptide - ENSP00000432087
NCBI entrez gene - 120227     See in Manteia.
OMIM - 608713
RefSeq - XM_017017195
RefSeq - XM_017017190
RefSeq - XM_017017191
RefSeq - XM_017017192
RefSeq - XM_017017193
RefSeq - XM_017017194
RefSeq - NM_024514
RefSeq - XM_005252788
RefSeq - XM_005252789
RefSeq - XM_011519895
RefSeq - XM_011519898
RefSeq Peptide - NP_078790
swissprot - E9PS56
swissprot - K7EMQ4
swissprot - E9PJT9
swissprot - Q6VVX0
Ensembl - ENSG00000186104
  
Related genetic diseases (OMIM): 600081 - Rickets due to defect in vitamin D 25-hydroxylation, 600081
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cyp2r1ENSDARG00000056587Danio rerio
 CYP2R1ENSGALG00000006050Gallus gallus
 Cyp2r1ENSMUSG00000030670Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CYP2J2 / P51589 / cytochrome P450 family 2 subfamily J member 2ENSG0000013471641
CYP2U1 / Q7Z449 / cytochrome P450 family 2 subfamily U member 1ENSG0000015501640
CYP2D6 / P10635 / cytochrome P450 family 2 subfamily D member 6ENSG0000010019738
CYP2D7 / A0A087X1C5 / cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)ENSG0000020570237
CYP2W1 / Q8TAV3 / cytochrome P450 family 2 subfamily W member 1ENSG0000007306734


Protein motifs (from Interpro)
Interpro ID Name
 IPR001128  Cytochrome P450
 IPR002401  Cytochrome P450, E-class, group I
 IPR017972  Cytochrome P450, conserved site
 IPR036396  Cytochrome P450 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006766 vitamin metabolic process TAS
 biological_processGO:0010038 response to metal ion IEA
 biological_processGO:0010164 response to cesium ion IEA
 biological_processGO:0010212 response to ionizing radiation IEA
 biological_processGO:0036378 calcitriol biosynthetic process from calciol IEA
 biological_processGO:0042359 vitamin D metabolic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031090 organelle membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0004497 monooxygenase activity IEA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0008395 steroid hydroxylase activity IBA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0020037 heme binding IEA
 molecular_functionGO:0030343 vitamin D3 25-hydroxylase activity TAS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Vitamin D (calciferol) metabolism
Vitamins
Defective CYP2R1 causes Rickets vitamin D-dependent 1B (VDDR1B)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000886 Deformed rib cage 
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 HP:0000893 Bulging of the costochondral junction 
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 HP:0000920 Enlargement of the costochondral junction 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002148 Hypophosphatemia "A lower than normal level of blood phosphate." [HPO:curators]
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 HP:0002355 Difficulty walking 
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 HP:0002653 Bone pain 
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 HP:0002663 Late ossifying epiphyses 
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 HP:0002748 Rickets 
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 HP:0002752 Sparse bone trabeculae 
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 HP:0002753 Thin bony cortex "Abnormal thinning of the cortical region of bones." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002979 Bowing of the legs 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
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 HP:0003013 Bulging epiphyses 
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 HP:0003020 Enlargement of the wrists 
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 HP:0003025 Irregular metaphyses 
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 HP:0003029 Enlargement of the ankles 
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003593 Early onset 
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 HP:0003698 Difficulty standing 
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 HP:0004492 Widely patent fontanels and sutures "An abnormally increased width of the cranial sutures of striking degree." [HPO:curators]
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 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
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 HP:0010502 Fibular bowing "A developmental defect with posteromedial fibular angulation." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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