ENSG00000186862


Homo sapiens

Features
Gene ID: ENSG00000186862
  
Biological name :PDZD7
  
Synonyms : PDZD7 / PDZ domain containing 7 / Q9H5P4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q24.31
Gene start: 101007683
Gene end: 101032295
  
Corresponding Affymetrix probe sets: 220555_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496747
Ensembl peptide - ENSP00000495417
Ensembl peptide - ENSP00000495531
Ensembl peptide - ENSP00000359234
Ensembl peptide - ENSP00000412533
Ensembl peptide - ENSP00000474447
Ensembl peptide - ENSP00000480489
Ensembl peptide - ENSP00000493998
Ensembl peptide - ENSP00000495283
NCBI entrez gene - 79955     See in Manteia.
OMIM - 612971
RefSeq - XM_017016668
RefSeq - NM_001195263
RefSeq - NM_024895
RefSeq - XM_011540179
RefSeq - XM_011540181
RefSeq - XM_011540182
RefSeq - XM_011540183
RefSeq - XM_017016667
RefSeq - XM_005270165
RefSeq - XM_011540177
RefSeq - XM_011540178
RefSeq Peptide - NP_001182192
RefSeq Peptide - NP_079171
swissprot - Q9H5P4
swissprot - S4R3J9
swissprot - H0Y7G1
Ensembl - ENSG00000186862
  
Related genetic diseases (OMIM): 276901 - {Retinal disease in Usher syndrome type IIA, modifier of}, 276901
  605472 - Usher syndrome, type IIC, GPR98/PDZD7 digenic, 605472
  618003 - Deafness, autosomal recessive 57, 618003
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdzd7aENSDARG00000076974Danio rerio
 PDZD7ENSGALG00000020726Gallus gallus
 Pdzd7ENSMUSG00000074818Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WHRN / Q9P202 / whirlinENSG0000009539720
USH1C / Q9Y6N9 / USH1 protein network component harmoninENSG0000000661114
PDZD11 / Q5EBL8 / PDZ domain containing 11ENSG000001205095


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045184 establishment of protein localization IEA
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound IEA
 biological_processGO:0060088 auditory receptor cell stereocilium organization IEA
 biological_processGO:0060117 auditory receptor cell development IEA
 cellular_componentGO:0002141 stereocilia ankle link IEA
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:1990696 USH2 complex IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000545 Myopia 
Show

 HP:0000572 Visual loss 
Show

 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000662 Night blindness 
Show

 HP:0000670 Carious teeth 
Show

 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
Show

 HP:0000691 Microdontia 
Show

 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
Show

 HP:0000738 Hallucinations 
Show

 HP:0000739 Anxiety 
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0002120 Cerebral cortical atrophy 
Show

 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
Show

 HP:0007730 Reduced iris pigmentation 
Show

 HP:0008527 Congenital sensorineural hearing loss 
Show

 HP:0011073 Abnormality of dental color "A developmental defect of tooth color." [HPO:ibailleulforestier]
Show

 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
Show

 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
Show

 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr