ENSG00000006611


Homo sapiens

Features
Gene ID: ENSG00000006611
  
Biological name :USH1C
  
Synonyms : Q9Y6N9 / USH1C / USH1 protein network component harmonin
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p15.1
Gene start: 17493895
Gene end: 17544416
  
Corresponding Affymetrix probe sets: 205137_x_at (Human Genome U133 Plus 2.0 Array)   211184_s_at (Human Genome U133 Plus 2.0 Array)   221173_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000432236
Ensembl peptide - ENSP00000317018
Ensembl peptide - ENSP00000432944
Ensembl peptide - ENSP00000437128
Ensembl peptide - ENSP00000436934
Ensembl peptide - ENSP00000005226
NCBI entrez gene - 10083     See in Manteia.
OMIM - 605242
RefSeq - XM_017017075
RefSeq - NM_001297764
RefSeq - NM_005709
RefSeq - NM_153676
RefSeq - XM_011519832
RefSeq - XM_011519834
RefSeq - XM_017017072
RefSeq - XM_017017074
RefSeq Peptide - NP_710142
RefSeq Peptide - NP_001284693
RefSeq Peptide - NP_005700
swissprot - A0A0S2Z4U9
swissprot - Q9Y6N9
swissprot - A0A0S2Z4V1
swissprot - E9PNW1
Ensembl - ENSG00000006611
  
Related genetic diseases (OMIM): 276904 - Usher syndrome, type 1C, 276904
  602092 - Deafness, autosomal recessive 18A, 602092
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ush1cENSDARG00000051876Danio rerio
 USH1CENSGALG00000006192Gallus gallus
 Ush1cENSMUSG00000030838Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WHRN / Q9P202 / whirlinENSG0000009539720
PDZD7 / Q9H5P4 / PDZ domain containing 7ENSG0000018686216
PDZD11 / Q5EBL8 / PDZ domain containing 11ENSG000001205095


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR030237  Harmonin
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000086 G2/M transition of mitotic cell cycle IMP
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0030046 parallel actin filament bundle assembly ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0032532 regulation of microvillus length ISS
 biological_processGO:0034622 cellular protein-containing complex assembly IDA
 biological_processGO:0042472 inner ear morphogenesis ISS
 biological_processGO:0042491 inner ear auditory receptor cell differentiation ISS
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0050953 sensory perception of light stimulus IMP
 biological_processGO:0050957 equilibrioception IMP
 biological_processGO:0051017 actin filament bundle assembly ISS
 biological_processGO:0060122 inner ear receptor cell stereocilium organization ISS
 biological_processGO:1904106 protein localization to microvillus ISS
 biological_processGO:1904970 brush border assembly ISS
 cellular_componentGO:0001750 photoreceptor outer segment ISS
 cellular_componentGO:0001917 photoreceptor inner segment ISS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane ISS
 cellular_componentGO:0005902 microvillus IEA
 cellular_componentGO:0005903 brush border IDA
 cellular_componentGO:0032420 stereocilium TAS
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045177 apical part of cell IDA
 cellular_componentGO:0045202 synapse ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030507 spectrin binding IDA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000375 Abnormality of cochlea "An abnormality of the cochlea, which is an inner ear structure comprised of a snail-shell like structure divided into three fluid-filled parts. Two are canals for the transmission of pressure and in the third is the organ of Corti, which detects pressure impulses and responds with electrical impulses which travel along the auditory nerve to the brain." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000550 Abolished electroretinogram (ERG) 
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 HP:0000572 Visual loss 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001425 Heterogeneous 
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 HP:0001756 Vestibular hypofunction 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0008499 High-grade hypermetropia 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0008555 Absent vestibular function 
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
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 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr