ENSG00000095397


Homo sapiens

Features
Gene ID: ENSG00000095397
  
Biological name :WHRN
  
Synonyms : Q9P202 / whirlin / WHRN
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q32
Gene start: 114402080
Gene end: 114505450
  
Corresponding Affymetrix probe sets: 221887_s_at (Human Genome U133 Plus 2.0 Array)   47553_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000354623
Ensembl peptide - ENSP00000363172
Ensembl peptide - ENSP00000363170
Ensembl peptide - ENSP00000265134
NCBI entrez gene - 25861     See in Manteia.
OMIM - 607928
RefSeq - XM_011518495
RefSeq - NM_001173425
RefSeq - NM_001346890
RefSeq - NM_015404
RefSeq - XM_011518484
RefSeq - XM_011518485
RefSeq - XM_011518486
RefSeq - XM_011518487
RefSeq - XM_011518488
RefSeq - NM_001083885
RefSeq Peptide - NP_001333819
RefSeq Peptide - NP_056219
RefSeq Peptide - NP_001077354
RefSeq Peptide - NP_001166896
swissprot - Q9P202
swissprot - A0A0C4DFN4
swissprot - A0A0C4DFT9
swissprot - A0A0A0MRR8
Ensembl - ENSG00000095397
  
Related genetic diseases (OMIM): 607084 - Deafness, autosomal recessive 31, 607084
  611383 - Usher syndrome, type 2D, 611383
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 whrnbENSDARG00000068166Danio rerio
 WHRNENSGALG00000038223Gallus gallus
 WhrnENSMUSG00000039137Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDZD7 / Q9H5P4 / PDZ domain containing 7ENSG0000018686223
USH1C / Q9Y6N9 / USH1 protein network component harmoninENSG0000000661120
PDZD11 / Q5EBL8 / PDZ domain containing 11ENSG000001205094


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR033028  Whirlin
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001895 retina homeostasis IMP
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0050953 sensory perception of light stimulus IMP
 biological_processGO:0060122 inner ear receptor cell stereocilium organization ISS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0032420 stereocilium ISS
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000572 Visual loss 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000670 Carious teeth 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0011073 Abnormality of dental color "A developmental defect of tooth color." [HPO:ibailleulforestier]
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
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 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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