ENSGALG00000038223


Gallus gallus

Features
Gene ID: ENSGALG00000038223
  
Biological name :WHRN
  
Synonyms : whirlin / WHRN
  
Possible biological names infered from orthology : Q80VW5 / Q9P202
  
Species: Gallus gallus
  
Chr. number: 17
Strand: -1
Band:
Gene start: 2972298
Gene end: 2990300
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000053846
swissprot - A0A1D5PLX5
Ensembl - ENSGALG00000038223
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 whrnbENSDARG00000068166Danio rerio
 WHRNENSG00000095397Homo sapiens
 WhrnENSMUSG00000039137Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDZD7 / PDZ domain containing 7 / Q9H5P4*ENSGALG0000002072625
USH1C / USH1 protein network component harmonin / Q9Y6N9*ENSGALG0000000619221
PDZD11 / Q5ZIK2 / PDZ domain-containing protein 11 / Q5EBL8* / Q9CZG9* / PDZ domain containing 11*ENSGALG000000041988


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR033028  Whirlin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0021694 cerebellar Purkinje cell layer formation IEA
 biological_processGO:0045184 establishment of protein localization IEA
 biological_processGO:0050953 sensory perception of light stimulus IEA
 biological_processGO:0060088 auditory receptor cell stereocilium organization IEA
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 biological_processGO:1990227 paranodal junction maintenance IEA
 cellular_componentGO:0001917 photoreceptor inner segment IEA
 cellular_componentGO:0002141 stereocilia ankle link IEA
 cellular_componentGO:0002142 stereocilia ankle link complex IEA
 cellular_componentGO:0005884 actin filament IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0032420 stereocilium IEA
 cellular_componentGO:0032421 stereocilium bundle IEA
 cellular_componentGO:0032426 stereocilium tip IEA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:1990075 periciliary membrane compartment IEA
 cellular_componentGO:1990696 USH2 complex IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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