ENSGALG00000006192


Gallus gallus

Features
Gene ID: ENSGALG00000006192
  
Biological name :USH1C
  
Synonyms : USH1C / USH1 protein network component harmonin
  
Possible biological names infered from orthology : Q9Y6N9
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 11938573
Gene end: 11982935
  
Corresponding Affymetrix probe sets: GgaAffx.3862.1.S1_at (Chicken Array)   GgaAffx.3862.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009976
NCBI entrez gene - 423073     See in Manteia.
RefSeq - XM_015286647
RefSeq - XM_015286649
RefSeq - XM_015286650
swissprot - E1C930
Ensembl - ENSGALG00000006192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ush1cENSDARG00000051876Danio rerio
 USH1CENSG00000006611Homo sapiens
 Ush1cENSMUSG00000030838Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WHRN / whirlin / Q80VW5* / Q9P202*ENSGALG0000003822319
PDZD7 / PDZ domain containing 7 / Q9H5P4*ENSGALG0000002072615
PDZD11 / Q5ZIK2 / PDZ domain-containing protein 11 / Q5EBL8* / Q9CZG9* / PDZ domain containing 11*ENSGALG000000041988


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR030237  Harmonin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000086 G2/M transition of mitotic cell cycle IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0034622 cellular protein-containing complex assembly IEA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050953 sensory perception of light stimulus IEA
 biological_processGO:0050957 equilibrioception IEA
 biological_processGO:1904106 protein localization to microvillus IEA
 biological_processGO:1904970 brush border assembly IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005902 microvillus IEA
 cellular_componentGO:0005903 brush border IEA
 cellular_componentGO:0045177 apical part of cell IEA
 molecular_functionGO:0030507 spectrin binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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