ENSG00000188641


Homo sapiens

Features
Gene ID: ENSG00000188641
  
Biological name :DPYD
  
Synonyms : dihydropyrimidine dehydrogenase / DPYD / Q12882
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p21.3
Gene start: 97077743
Gene end: 97995000
  
Corresponding Affymetrix probe sets: 1554534_at (Human Genome U133 Plus 2.0 Array)   1554536_at (Human Genome U133 Plus 2.0 Array)   204646_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000307107
Ensembl peptide - ENSP00000359211
NCBI entrez gene - 1806     See in Manteia.
OMIM - 612779
RefSeq - XM_017000510
RefSeq - NM_000110
RefSeq - NM_001160301
RefSeq - XM_017000507
RefSeq - XM_017000508
RefSeq - XM_017000509
RefSeq - XM_005270562
RefSeq - XM_006710397
RefSeq Peptide - NP_001153773
RefSeq Peptide - NP_000101
swissprot - Q12882
Ensembl - ENSG00000188641
  
Related genetic diseases (OMIM): 274270 - 5-fluorouracil toxicity, 274270
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dpyda.1ENSDARG00000102671Danio rerio
 dpyda.3ENSDARG00000086853Danio rerio
 dpydbENSDARG00000010267Danio rerio
 DPYDENSGALG00000005509Gallus gallus
 DpydENSMUSG00000033308Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005720  Dihydroorotate dehydrogenase domain
 IPR009051  Alpha-helical ferredoxin
 IPR013785  Aldolase-type TIM barrel
 IPR017896  4Fe-4S ferredoxin-type, iron-sulphur binding domain
 IPR017900  4Fe-4S ferredoxin, iron-sulphur binding, conserved site
 IPR023753  FAD/NAD(P)-binding domain
 IPR028261  Dihydroprymidine dehydrogenase domain II
 IPR036188  FAD/NAD(P)-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006145 purine nucleobase catabolic process IMP
 biological_processGO:0006208 pyrimidine nucleobase catabolic process ISS
 biological_processGO:0006210 thymine catabolic process IDA
 biological_processGO:0006212 uracil catabolic process IDA
 biological_processGO:0006214 thymidine catabolic process IDA
 biological_processGO:0019483 beta-alanine biosynthetic process IEA
 biological_processGO:0046135 pyrimidine nucleoside catabolic process TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEA
 molecular_functionGO:0017113 dihydropyrimidine dehydrogenase (NADP+) activity TAS
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050660 flavin adenine dinucleotide binding ISS
 molecular_functionGO:0050661 NADP binding ISS
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
Pyrimidine catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000293 Full cheeks 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000483 Astigmatism 
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 HP:0000490 Deep set eyes 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000717 Autism 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0000742 Self-mutilation 
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 HP:0000750 Impaired language development 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0002059 Cerebral atrophy 
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 HP:0002445 Tetraplegia 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003654 Dihydropyrimidine dehydrogenase deficiency 
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 HP:0003812 Phenotypic variability 
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 HP:0100738 Eating disorders 
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 HP:0100962 Shyness 
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 HP:0400004 Long ear "Median longitudinal ear length greater than two SD above the mean determined by the maximal distance from the superior aspect to the inferior aspect of the external ear." [eom:2028381d5c61842a, pmid:19152421]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000188641 DPYD / Q12882 / dihydropyrimidine dehydrogenase  / complex






 

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