ENSG00000196712


Homo sapiens

Features
Gene ID: ENSG00000196712
  
Biological name :NF1
  
Synonyms : neurofibromin 1 / NF1 / P21359
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q11.2
Gene start: 31094927
Gene end: 31382116
  
Corresponding Affymetrix probe sets: 204323_x_at (Human Genome U133 Plus 2.0 Array)   204325_s_at (Human Genome U133 Plus 2.0 Array)   210631_at (Human Genome U133 Plus 2.0 Array)   211094_s_at (Human Genome U133 Plus 2.0 Array)   211095_at (Human Genome U133 Plus 2.0 Array)   211914_x_at (Human Genome U133 Plus 2.0 Array)   212676_at (Human Genome U133 Plus 2.0 Array)   212678_at (Human Genome U133 Plus 2.0 Array)   216115_at (Human Genome U133 Plus 2.0 Array)   243476_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000491431
Ensembl peptide - ENSP00000467080
Ensembl peptide - ENSP00000491589
Ensembl peptide - ENSP00000492721
Ensembl peptide - ENSP00000348498
Ensembl peptide - ENSP00000351015
Ensembl peptide - ENSP00000389907
Ensembl peptide - ENSP00000412921
Ensembl peptide - ENSP00000462157
Ensembl peptide - ENSP00000462408
Ensembl peptide - ENSP00000462700
Ensembl peptide - ENSP00000463682
Ensembl peptide - ENSP00000463819
Ensembl peptide - ENSP00000464678
Ensembl peptide - ENSP00000464702
Ensembl peptide - ENSP00000465138
NCBI entrez gene - 4763     See in Manteia.
OMIM - 613113
RefSeq - XM_017024690
RefSeq - NM_000267
RefSeq - NM_001042492
RefSeq - NM_001128147
RefSeq - XM_005257983
RefSeq - XM_005257984
RefSeq - XM_006721922
RefSeq - XM_006721924
RefSeq - XM_006721925
RefSeq - XM_006721926
RefSeq - XM_011524852
RefSeq - XM_011524857
RefSeq - XM_017024689
RefSeq Peptide - NP_001035957
RefSeq Peptide - NP_000258
RefSeq Peptide - NP_001121619
swissprot - H0Y465
swissprot - J3KRT8
swissprot - J3KSB5
swissprot - P21359
swissprot - J3QLS2
swissprot - J3QQN8
swissprot - J3QSG6
swissprot - K7EID4
swissprot - K7EJE7
swissprot - K7ENT2
swissprot - J3KSX8
swissprot - A0A1W2PPA7
swissprot - A0A1W2PS74
Ensembl - ENSG00000196712
  
Related genetic diseases (OMIM): 607785 - Leukemia, juvenile myelomonocytic, 607785
  162210 - Neurofibromatosis, familial spinal, 162210
  162200 - Neurofibromatosis, type 1, 162200
  601321 - Neurofibromatosis-Noonan syndrome, 601321
  193520 - Watson syndrome, 193520
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nf1aENSDARG00000012982Danio rerio
 nf1bENSDARG00000004184Danio rerio
 NF1ENSGALG00000005660Gallus gallus
 Nf1ENSMUSG00000020716Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001251  CRAL-TRIO lipid binding domain
 IPR001936  Ras GTPase-activating domain
 IPR008936  Rho GTPase activation protein
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR023152  Ras GTPase-activating protein, conserved site
 IPR036865  CRAL-TRIO lipid binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade ISS
 biological_processGO:0001649 osteoblast differentiation ISS
 biological_processGO:0001656 metanephros development ISS
 biological_processGO:0001666 response to hypoxia ISS
 biological_processGO:0001889 liver development ISS
 biological_processGO:0001937 negative regulation of endothelial cell proliferation IMP
 biological_processGO:0001938 positive regulation of endothelial cell proliferation IEA
 biological_processGO:0001952 regulation of cell-matrix adhesion ISS
 biological_processGO:0001953 negative regulation of cell-matrix adhesion IEA
 biological_processGO:0006469 negative regulation of protein kinase activity ISS
 biological_processGO:0007154 cell communication ISS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007265 Ras protein signal transduction ISS
 biological_processGO:0007406 negative regulation of neuroblast proliferation ISS
 biological_processGO:0007420 brain development ISS
 biological_processGO:0007422 peripheral nervous system development ISS
 biological_processGO:0007507 heart development ISS
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0008542 visual learning ISS
 biological_processGO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014044 Schwann cell development ISS
 biological_processGO:0014065 phosphatidylinositol 3-kinase signaling ISS
 biological_processGO:0016525 negative regulation of angiogenesis IEA
 biological_processGO:0021510 spinal cord development ISS
 biological_processGO:0021764 amygdala development IEA
 biological_processGO:0021897 forebrain astrocyte development ISS
 biological_processGO:0021915 neural tube development IEA
 biological_processGO:0021987 cerebral cortex development ISS
 biological_processGO:0022011 myelination in peripheral nervous system ISS
 biological_processGO:0030036 actin cytoskeleton organization ISS
 biological_processGO:0030198 extracellular matrix organization ISS
 biological_processGO:0030199 collagen fibril organization ISS
 biological_processGO:0030325 adrenal gland development ISS
 biological_processGO:0030336 negative regulation of cell migration IMP
 biological_processGO:0032228 regulation of synaptic transmission, GABAergic IEA
 biological_processGO:0034605 cellular response to heat IEA
 biological_processGO:0035021 negative regulation of Rac protein signal transduction IEA
 biological_processGO:0042060 wound healing ISS
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0042992 obsolete negative regulation of transcription factor import into nucleus ISS
 biological_processGO:0043065 positive regulation of apoptotic process ISS
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0043407 negative regulation of MAP kinase activity ISS
 biological_processGO:0043408 regulation of MAPK cascade IEA
 biological_processGO:0043409 negative regulation of MAPK cascade IMP
 biological_processGO:0043473 pigmentation ISS
 biological_processGO:0043525 positive regulation of neuron apoptotic process ISS
 biological_processGO:0043535 regulation of blood vessel endothelial cell migration IMP
 biological_processGO:0043547 positive regulation of GTPase activity IMP
 biological_processGO:0045124 regulation of bone resorption ISS
 biological_processGO:0045671 negative regulation of osteoclast differentiation IEA
 biological_processGO:0045685 regulation of glial cell differentiation ISS
 biological_processGO:0045762 positive regulation of adenylate cyclase activity ISS
 biological_processGO:0045765 regulation of angiogenesis IMP
 biological_processGO:0046580 negative regulation of Ras protein signal transduction IBA
 biological_processGO:0046929 negative regulation of neurotransmitter secretion IEA
 biological_processGO:0048147 negative regulation of fibroblast proliferation ISS
 biological_processGO:0048169 regulation of long-term neuronal synaptic plasticity IEA
 biological_processGO:0048485 sympathetic nervous system development ISS
 biological_processGO:0048593 camera-type eye morphogenesis ISS
 biological_processGO:0048712 negative regulation of astrocyte differentiation IEA
 biological_processGO:0048715 negative regulation of oligodendrocyte differentiation ISS
 biological_processGO:0048745 smooth muscle tissue development ISS
 biological_processGO:0048820 hair follicle maturation IEA
 biological_processGO:0048844 artery morphogenesis ISS
 biological_processGO:0048853 forebrain morphogenesis ISS
 biological_processGO:0050890 cognition IMP
 biological_processGO:0061534 gamma-aminobutyric acid secretion, neurotransmission IEA
 biological_processGO:0061535 glutamate secretion, neurotransmission IEA
 biological_processGO:0098597 observational learning IEA
 biological_processGO:1900271 regulation of long-term synaptic potentiation IEA
 biological_processGO:1902043 positive regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
 biological_processGO:2001241 positive regulation of extrinsic apoptotic signaling pathway in absence of ligand IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030424 axon IDA
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane IBA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005096 GTPase activator activity IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0008429 phosphatidylethanolamine binding IDA
 molecular_functionGO:0031210 phosphatidylcholine binding IDA


Pathways (from Reactome)
Pathway description
Regulation of RAS by GAPs
Signaling by RAS mutants
RAS signaling downstream of NF1 loss-of-function variants


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000053 Macroorchidism "The presence of abnormally large testes." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000465 Webbed neck 
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000535 Sparse eyebrows 
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000750 Impaired language development 
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 HP:0000765 Abnormality of the thorax "Any abnormality of the thorax (the region of the body formed by the sternum, the thoracic vertebrae and the ribs)." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000915 Pectus excavatum inferiorly "Pectus excavatum (defect of the chest wall characterized by depression of the sternum) affecting primarily the inferior region of the sternum." [HPO:curators]
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 HP:0000917 Pectus carinatum superiorly "Pectus carinatum affecting primarily the superior part of the sternum." [HPO:curators]
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 HP:0000957 Cafe-au-lait spots 
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 HP:0000997 Axillary freckling 
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 HP:0001067 Neurofibromas 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001428 Somatic mutation 
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 HP:0001480 Freckling 
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 HP:0001548 Overgrowth 
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001684 Secundum atrial septal defect 
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 HP:0001920 Renal artery stenosis 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002162 Low posterior hairline 
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 HP:0002385 Paraparesis 
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 HP:0002410 Aqueductal stenosis "Stenosis of the cerebral aqueduct (also known as the mesencephalic duct, aqueductus mesencephali, or aqueduct of Sylvius), which connects the third cerebral ventricle in the diencephalon to the fourth ventricle, which is between the pons and cerebellum." [HPO:curators]
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002666 Pheochromocytoma "Pheochromocytomas (also known as chromaffin tumors) produce, store, and secrete catecholamines. Pheochromocytomas usually originate from the adrenal medulla but may also develop from chromaffin cells in or about sympathetic ganglia. A common symptom of pheochromocytoma is hypertension owing to release of catecholamines." [HPO:curators]
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 HP:0002857 Genu valgum 
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 HP:0002858 Meningioma 
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 HP:0002859 Rhabdomyosarcoma 
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 HP:0002897 Parathyroid adenoma 
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 HP:0002967 Cubitus valgus 
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 HP:0003010 Prolonged bleeding time 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004411 Deviated nasal septum 
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
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 HP:0005272 Prominent nasolabial folds 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0006851 Spinal nerve root neurofibromas, symmetric, multiple 
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 HP:0007340 Lower limb muscle weakness "Weakness of the muscles of the legs." [HPO:curators]
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 HP:0007565 Multiple cafe-au-lait spots 
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 HP:0009023 Abdominal wall muscle weakness 
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 HP:0009592 Astrocytoma "Astrocytoma is a neoplasm of the central nervous system derived from astrocytes." [HPO:curators]
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 HP:0009732 Plexiform neurofibroma "A neurofibroma in which Schwann cells proliferate inside the nerve sheath, producing an irregularly thickened, distorted, tortuous structure." [HPO:curators]
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 HP:0009734 Optic glioma "A glioma originating in the optic nerves or chiasm." [HPO:curators]
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 HP:0009735 Spinal neurofibromas "Neurofibromas originating in the spine." [HPO:curators]
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 HP:0009736 Tibial pseudoarthrosis "Pseudarthrosis, or "false joint" of the tibia is the result of a developmental failure in the tibia progressing to spontaneous fracture and subsequent fibrous nonunion. The fracture is rarely present at birth but commonly develops during the first 18 months of life." [HPO:curators]
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 HP:0009737 Lisch nodules "The presence of pigmented, oval and dome-shaped raised hamartomatous nevi affecting the iris." [HPO:curators]
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 HP:0009928 Ala nasi, thick "Increase in bulk of the ala nasi." [pmid:19152422]
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 HP:0010302 Spinal tumor "A cancerous or noncancerous growth that develops within or near the spinal cord or in the bones of the spine." [HPO:curators]
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 HP:0011039 Abnormality of the helix "An abnormality of the `helix` (FMA:60992)." [HPO:probinson]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0011803 Bifid nose "Visually assessable vertical indentation, cleft, or depression of the nasal bridge, ridge and tip." [pmid:19152422]
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 HP:0012209 Juvenile myelomonocytic leukemia "Juvenile myelomonocytic leukemia (JMML) is a lethal myeloproliferative disease of young childhood characterized clinically by overproduction of myelomonocytic cells and by the in vitro phenotype of hematopoietic progenitor hypersensitivity to granulocyte-macrophage colony-stimulating factor." [HPO:probinson, pmid:18954903]
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 HP:0030052 Inguinal freckling "The presence in the inguinal region (groin) of an increased number of freckles, small circular spots on the skin that are darker than the surrounding skin because of deposits of melanin." []
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 HP:0100697 Neurofibrosarcoma "A form of malignant cancer of the connective tissue surrounding nerves. Given its origin and behavior it is classified as a sarcoma. About half the cases are diagnosed in people with neurofibromatosis." [HPO:sdoelken]
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 HP:0100763 Abnormality of the lymphatic system 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166068 Q7Z699 / SPRED1 / sprouty related EVH1 domain containing 1  / reaction / complex






 

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