ENSG00000198420


Homo sapiens

Features
Gene ID: ENSG00000198420
  
Biological name :TCAF1
  
Synonyms : Q9Y4C2 / TCAF1 / TRPM8 channel associated factor 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q35
Gene start: 143851375
Gene end: 143902198
  
Corresponding Affymetrix probe sets: 204403_x_at (Human Genome U133 Plus 2.0 Array)   210529_s_at (Human Genome U133 Plus 2.0 Array)   212979_s_at (Human Genome U133 Plus 2.0 Array)   212981_s_at (Human Genome U133 Plus 2.0 Array)   224030_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000417600
Ensembl peptide - ENSP00000348220
Ensembl peptide - ENSP00000418432
Ensembl peptide - ENSP00000420607
Ensembl peptide - ENSP00000419622
Ensembl peptide - ENSP00000419235
NCBI entrez gene - 9747     See in Manteia.
OMIM - 616251
RefSeq - XM_017012836
RefSeq - XM_005250075
RefSeq - XM_005250076
RefSeq - XM_005250077
RefSeq - XM_006716191
RefSeq - XM_006716192
RefSeq - XM_017012833
RefSeq - XM_017012834
RefSeq - XM_017012835
RefSeq - NM_001206938
RefSeq - NM_001206941
RefSeq - NM_014719
RefSeq - XM_005250074
RefSeq Peptide - NP_055534
RefSeq Peptide - NP_001193867
RefSeq Peptide - NP_001193870
swissprot - C9K0E7
swissprot - C9J648
swissprot - Q9Y4C2
swissprot - C9JD13
swissprot - C9J9F4
Ensembl - ENSG00000198420
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CR925813.1ENSDARG00000098171Danio rerio
 si:ch211-210b2.2ENSDARG00000009402Danio rerio
 si:ch211-210b2.3ENSDARG00000095212Danio rerio
 si:ch211-210b2.3ENSDARG00000096927Danio rerio
 Tcaf1ENSMUSG00000036667Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCAF2 / A6NFQ2 / TRPM8 channel associated factor 2ENSG0000017037959
TCAF2C / TRPM8 channel associated factor 2CENSG0000028352849


Protein motifs (from Interpro)
Interpro ID Name
 IPR000772  Ricin B, lectin domain
 IPR029062  Class I glutamine amidotransferase-like
 IPR031161  Peptidase family M60 domain
 IPR035423  M60-like domain, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030336 negative regulation of cell migration IDA
 biological_processGO:0090314 positive regulation of protein targeting to membrane IMP
 biological_processGO:1901529 positive regulation of anion channel activity IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0044325 ion channel binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr