ENSMUSG00000036667


Mus musculus

Features
Gene ID: ENSMUSG00000036667
  
Biological name :Tcaf1
  
Synonyms : Mus musculus TRPM8 channel-associated factor 1 (Tcaf1), transcript variant 2, mRNA. / Q8BNE1 / Tcaf1
  
Possible biological names infered from orthology : Q9Y4C2 / TRPM8 channel associated factor 1
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: B2.1
Gene start: 42668002
Gene end: 42710088
  
Corresponding Affymetrix probe sets: 10544462 (MoGene1.0st)   1428540_at (Mouse Genome 430 2.0 Array)   1428541_at (Mouse Genome 430 2.0 Array)   1430436_at (Mouse Genome 430 2.0 Array)   1437639_at (Mouse Genome 430 2.0 Array)   1453437_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000036379
Ensembl peptide - ENSMUSP00000046137
Ensembl peptide - ENSMUSP00000114036
NCBI entrez gene - 77574     See in Manteia.
MGI - MGI:1914665
RefSeq - XM_017321830
RefSeq - NM_001355769
RefSeq - NM_001355770
RefSeq - NM_029930
RefSeq - XM_006506753
RefSeq - XM_006506754
RefSeq - XM_006506755
RefSeq - XM_006506756
RefSeq - XM_006506751
RefSeq - XM_006506752
RefSeq Peptide - NP_001342699
RefSeq Peptide - NP_084206
RefSeq Peptide - NP_001342698
swissprot - Q8BNE1
Ensembl - ENSMUSG00000036667
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CR925813.1ENSDARG00000098171Danio rerio
 si:ch211-210b2.2ENSDARG00000009402Danio rerio
 si:ch211-210b2.3ENSDARG00000095212Danio rerio
 si:ch211-210b2.3ENSDARG00000096927Danio rerio
 TCAF1ENSG00000198420Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tcaf2 / Q921K8 / TRPM8 channel-associated factor 2 / A6NFQ2* / TCAF2C* / TRPM8 channel associated factor 2C*ENSMUSG0000002985160
Tcaf3 / Q6QR59 / TRPM8 channel-associated factor 3 ENSMUSG0000001865649


Protein motifs (from Interpro)
Interpro ID Name
 IPR029062  Class I glutamine amidotransferase-like
 IPR031161  Peptidase family M60 domain
 IPR035423  M60-like domain, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030336 negative regulation of cell migration ISO
 biological_processGO:0090314 positive regulation of protein targeting to membrane ISO
 biological_processGO:1901529 positive regulation of anion channel activity ISO
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0044325 ion channel binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr