ENSG00000204842


Homo sapiens

Features
Gene ID: ENSG00000204842
  
Biological name :ATXN2
  
Synonyms : ataxin 2 / ATXN2 / Q99700
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.12
Gene start: 111443485
Gene end: 111599676
  
Corresponding Affymetrix probe sets: 202622_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000447741
Ensembl peptide - ENSP00000373805
Ensembl peptide - ENSP00000373806
Ensembl peptide - ENSP00000439338
Ensembl peptide - ENSP00000445583
Ensembl peptide - ENSP00000446512
Ensembl peptide - ENSP00000446576
Ensembl peptide - ENSP00000447225
Ensembl peptide - ENSP00000448640
Ensembl peptide - ENSP00000449566
Ensembl peptide - ENSP00000474442
Ensembl peptide - ENSP00000474645
Ensembl peptide - ENSP00000476504
Ensembl peptide - ENSP00000481448
Ensembl peptide - ENSP00000493566
Ensembl peptide - ENSP00000493897
Ensembl peptide - ENSP00000494663
Ensembl peptide - ENSP00000495833
Ensembl peptide - ENSP00000496055
Ensembl peptide - ENSP00000496279
Ensembl peptide - ENSP00000496329
Ensembl peptide - ENSP00000366843
NCBI entrez gene - 6311     See in Manteia.
OMIM - 601517
RefSeq - NM_001310123
RefSeq - NM_002973
RefSeq - NM_001310121
RefSeq Peptide - NP_001297050
RefSeq Peptide - NP_001297052
RefSeq Peptide - NP_002964
swissprot - F8W0B5
swissprot - F8WB05
swissprot - F8WB06
swissprot - H0YH87
swissprot - Q99700
swissprot - S4R3J6
swissprot - S4R3R6
swissprot - V9GY86
swissprot - F8VQP2
swissprot - F8VRK6
swissprot - F8VVY6
swissprot - F8VZC1
Ensembl - ENSG00000204842
  
Related genetic diseases (OMIM): 168600 - {Parkinson disease, late-onset, susceptibility to}, 168600
  183090 - Spinocerebellar ataxia 2, 183090
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atxn2ENSDARG00000052897Danio rerio
 ATXN2ENSGALG00000004625Gallus gallus
 Atxn2ENSMUSG00000042605Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATXN2L / Q8WWM7 / ataxin 2 likeENSG0000016848832


Protein motifs (from Interpro)
Interpro ID Name
 IPR009604  LsmAD domain
 IPR009818  Ataxin-2, C-terminal
 IPR010920  LSM domain superfamily
 IPR025852  Ataxin 2, SM domain
 IPR033093  Ataxin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002091 negative regulation of receptor internalization IMP
 biological_processGO:0006417 regulation of translation NAS
 biological_processGO:0010603 regulation of cytoplasmic mRNA processing body assembly IBA
 biological_processGO:0016070 RNA metabolic process NAS
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IMP
 biological_processGO:0034063 stress granule assembly IMP
 biological_processGO:0050658 RNA transport NAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005844 polysome IDA
 cellular_componentGO:0010494 cytoplasmic stress granule IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005154 epidermal growth factor receptor binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000514 Slow saccades 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000623 Supranuclear ophthalmoplegia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000641 Dysmetric saccades 
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 HP:0000657 Oculomotor apraxia 
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000739 Anxiety 
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 HP:0001151 Impaired horizontal smooth pursuit "An `abnormality of ocular smooth pursuit` (HP:0000617) characterized by an impairment of the ability to track horizontally moving objects." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001310 Dysmetria 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002063 Rigidity 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002094 Dyspnea 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002172 Postural instability 
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
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 HP:0002180 Neurodegeneration 
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 HP:0002198 Enlarged fourth ventricle 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002495 Impaired vibratory sense "A decrease in the ability to perceive vibration. Clinically, this is usually tested with a tuning fork which vibrates at 128 Hz and is applied to bony prominences such as the malleoli at the ankles or the metacarpal-phalangeal joints. There is a slow decay of vibration from the tuning fork. The degree of vibratory sense loss can be crudely estimated by counting the number of seconds that the examiner can perceive the vibration longer than the patient." [HPO:curators]
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 HP:0002503 Spinocerebellar tract degeneration 
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 HP:0002536 Abnormal cortical gyration "An abnormality of the gyri (i.e., the ridges) of the cerebral cortex of the brain." [HPO:curators]
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 HP:0002542 Olivopontocerebellar atrophy 
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0002878 Early respiratory failure 
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 HP:0003133 Abnormal spinocerebellar tracts, dorsal columns, pyramidal tracts, cerebellum and medulla 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003743 Genetic anticipation 
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 HP:0005945 Laryngeal obstruction 
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 HP:0006801 Hyperactive deep tendon reflexes 
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 HP:0006955 Olivopontocerebellar hypoplasia 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0008311 Spinal cord posterior columns myelin loss 
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 HP:0012082 Cerebellar Purkinje layer atrophy "Atrophy of the cerebellum affecting primarily the Purkinje cell layer." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0012762 Cerebral white matter atrophy "The presence of atrophy (wasting) of the cerebral white matter." [UToronto:htrang]
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 HP:0025461 Abnormal cell morphology "Any anomaly of cell structure." []
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 HP:0030186 Kinetic tremor "Tremor that occurs during any voluntary movement. It may include visually or non-visually guided movements. Tremor during target directed movement is called intention tremor." []
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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 HP:0045007 Abnormality of the substantia nigra 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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