ENSG00000213689


Homo sapiens

Features
Gene ID: ENSG00000213689
  
Biological name :TREX1
  
Synonyms : Q9NSU2 / three prime repair exonuclease 1 / TREX1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p21.31
Gene start: 48465811
Gene end: 48467645
  
Corresponding Affymetrix probe sets: 205875_s_at (Human Genome U133 Plus 2.0 Array)   34689_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000486444
Ensembl peptide - ENSP00000494511
Ensembl peptide - ENSP00000492023
Ensembl peptide - ENSP00000486676
Ensembl peptide - ENSP00000411331
Ensembl peptide - ENSP00000412404
Ensembl peptide - ENSP00000415972
NCBI entrez gene - 11277     See in Manteia.
OMIM - 606609
RefSeq - NM_007248
RefSeq - NM_016381
RefSeq - NM_033629
RefSeq Peptide - NP_009179
RefSeq Peptide - NP_338599
RefSeq Peptide - NP_057465
swissprot - Q9NSU2
swissprot - A0A1W2PR12
swissprot - Q5TZT0
swissprot - C9J052
Ensembl - ENSG00000213689
  
Related genetic diseases (OMIM): 152700 - {Systemic lupus erythematosus, susceptibility to}, 152700
  192315 - Vasculopathy, retinal, with cerebral leukodystrophy, 192315
  225750 - Aicardi-Goutieres syndrome 1, dominant and recessive, 225750
  610448 - Chilblain lupus, 610448
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Gm42641ENSMUSG00000105383Mus musculus
 Trex1ENSMUSG00000049734Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TREX2 / Q9BQ50 / three prime repair exonuclease 2ENSG0000018347929


Protein motifs (from Interpro)
Interpro ID Name
 IPR012337  Ribonuclease H-like superfamily
 IPR013520  Exonuclease, RNase T/DNA polymerase III
 IPR036397  Ribonuclease H superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006259 DNA metabolic process ISS
 biological_processGO:0006260 DNA replication NAS
 biological_processGO:0006281 DNA repair TAS
 biological_processGO:0006298 mismatch repair NAS
 biological_processGO:0006310 DNA recombination NAS
 biological_processGO:0032479 regulation of type I interferon production TAS
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope NAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding TAS
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0008296 3"-5"-exodeoxyribonuclease activity ISS
 molecular_functionGO:0008408 3"-5" exonuclease activity TAS
 molecular_functionGO:0008853 exodeoxyribonuclease III activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0032405 MutLalpha complex binding IDA
 molecular_functionGO:0032407 MutSalpha complex binding IDA
 molecular_functionGO:0042803 protein homodimerization activity TAS
 molecular_functionGO:0046872 metal ion binding TAS


Pathways (from Reactome)
Pathway description
Regulation by TREX1
IRF3-mediated induction of type I IFN


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000093 Proteinuria 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000529 Progressive visual loss 
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 HP:0000573 Retinal hemorrhage 
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 HP:0000625 Eyelid, cleft "A short discontinuity of the margin of the lower or upper eyelid." [pmid:19125427]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000726 Dementia 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000967 Petechiae 
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 HP:0001009 Telangiectasia "Telangiectasias refer to small dilated blood vessels located near the surface of the skin or mucous membranes, measuring between 0.5 and 1 millimeter in diameter." [HPO:curators]
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 HP:0001063 Acrocyanosis 
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 HP:0001147 Retinal exudates 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001297 Stroke 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001357 Plagiocephaly "An asymmetric head shape often resulting from premature closure of only one of the coronal sutures." [HPO:curators]
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 HP:0001413 Micronodular cirrhosis 
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 HP:0001433 Hepatosplenomegaly 
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001945 Fever 
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 HP:0002059 Cerebral atrophy 
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 HP:0002062 Abnormality of the pyramidal tracts "An abnormality of the pyramidal system of motor neurons, whose chief element, the corticospinal tract, is the only direct connection between the brain and the spinal cord. In addition to the corticospinal tract, the pyramidal system includes the corticobulbar, corticomesencephalic, and corticopontine tracts." [HPO:curators]
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 HP:0002071 Extrapyramidal signs 
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 HP:0002076 Migraine 
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 HP:0002132 Porencephaly 
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 HP:0002135 Basal ganglia calcification "Calcification affecting one or more structures of the basal ganglia." [HPO:curators]
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 HP:0002139 Arrhinencephaly 
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 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002352 Leukoencephalopathy 
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 HP:0002395 Lower limb hyperreflexia 
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 HP:0002415 Leukodystrophy 
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 HP:0002421 Poor head control 
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 HP:0002448 Encephalopathy, progressive 
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 HP:0002518 Periventricular white matter changes 
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 HP:0002829 Arthralgia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003474 Sensory impairment 
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 HP:0003493 Antinuclear antibody positive 
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 HP:0003565 Elevated erythrocyte sedimentation rate 
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 HP:0003581 Onset in adulthood 
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 HP:0003621 Juvenile onset 
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 HP:0003676 Progressive disorder 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004394 Multiple gastric polyps 
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 HP:0006579 Prolonged neonatal jaundice 
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 HP:0007009 Central nervous system degeneration 
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 HP:0007017 Progressive forgetfulness 
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 HP:0007042 Focal white matter lesions 
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 HP:0007321 Deep white matter hypodensities 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0009704 Chronic CSF lymphocytosis "Chronic cerebrospinal fluid (CSF) lymphocytosis is defined as the finding, in at least two serial CSF examinations, of more than 5 cells per cubic millimeter." [HPO:curators]
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 HP:0009709 Increased CSF interferon alpha "Increased concentration of interferon alpha in the cerebrospinal fluid (CSF)." [HPO:curators]
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 HP:0009710 Chilblain lesions "Chilblains are acral ulcers." [HPO:curators]
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 HP:0009763 Limb pain "Chronic pain in the limbs with no clear focal etiology." [HPO:curators]
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 HP:0030880 Raynaud phenomenon 
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 HP:0040049 Macular edema 
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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 HP:0200029 vasculitis in the skin 
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 HP:0200030 punctate vasculitis skin lesions 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000213689 TREX1 / Q9NSU2 / three prime repair exonuclease 1  / complex






 

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