ENSGALG00000000146


Gallus gallus

Features
Gene ID: ENSGALG00000000146
  
Biological name :SUPT6H
  
Synonyms : SPT6 homolog, histone chaperone / SUPT6H
  
Possible biological names infered from orthology : Q62383 / Q7KZ85 / Supt6 / Transcription elongation factor SPT6
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 5773592
Gene end: 5793552
  
Corresponding Affymetrix probe sets: GgaAffx.2461.1.S1_at (Chicken Array)   GgaAffx.99.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000000199
NCBI entrez gene - 425418     See in Manteia.
RefSeq - XM_015296076
RefSeq - XM_423183
swissprot - E1C1S5
Ensembl - ENSGALG00000000146
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8UVK2ENSDARG00000006524Danio rerio
 Q7KZ85ENSG00000109111Homo sapiens
 Supt6ENSMUSG00000002052Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000980  SH2 domain
 IPR003029  S1 domain
 IPR006641  YqgF/RNase H-like domain
 IPR010994  RuvA domain 2-like
 IPR012337  Ribonuclease H-like superfamily
 IPR012340  Nucleic acid-binding, OB-fold
 IPR017072  Transcription elongation factor Spt6
 IPR023323  Tex-like domain superfamily
 IPR027999  Death-like domain of Spt6
 IPR028083  Spt6 acidic, N-terminal domain
 IPR028088  Helix-turn-helix DNA-binding domain of Spt6
 IPR028231  Transcription elongation factor Spt6, YqgF domain
 IPR032706  Transcription elongation factor Spt6, helix-hairpin-helix motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0006342 chromatin silencing IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IBA
 biological_processGO:0010793 regulation of mRNA export from nucleus IEA
 biological_processGO:0032784 regulation of DNA-templated transcription, elongation IEA
 biological_processGO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0034728 nucleosome organization IBA
 biological_processGO:0042789 mRNA transcription by RNA polymerase II IBA
 biological_processGO:0045191 regulation of isotype switching IEA
 biological_processGO:0050684 regulation of mRNA processing IEA
 biological_processGO:0051147 regulation of muscle cell differentiation IEA
 biological_processGO:0061086 negative regulation of histone H3-K27 methylation IEA
 biological_processGO:0070827 chromatin maintenance IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0008023 transcription elongation factor complex IBA
 cellular_componentGO:0035327 transcriptionally active chromatin IBA
 molecular_functionGO:0000991 transcription factor activity, core RNA polymerase II binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0031491 nucleosome binding IBA
 molecular_functionGO:0042393 histone binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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