ENSGALG00000001725


Gallus gallus

Features
Gene ID: ENSGALG00000001725
  
Biological name :TNRC6C
  
Synonyms : TNRC6C / trinucleotide repeat containing 6C
  
Possible biological names infered from orthology : Q9HCJ0
  
Species: Gallus gallus
  
Chr. number: 18
Strand: 1
Band:
Gene start: 4027325
Gene end: 4099177
  
Corresponding Affymetrix probe sets: Gga.19361.1.S1_s_at (Chicken Array)   GgaAffx.1130.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048771
Ensembl peptide - ENSGALP00000057802
Ensembl peptide - ENSGALP00000002643
NCBI entrez gene - 417348     See in Manteia.
RefSeq - XM_015295281
RefSeq - XM_015295278
RefSeq - XM_015295279
RefSeq - XM_015295280
RefSeq - XM_004946104
RefSeq - XM_015295275
RefSeq - XM_015295276
RefSeq - XM_015295277
swissprot - A0A1D5PXV4
swissprot - F1NI60
swissprot - A0A1D5P7S9
Ensembl - ENSGALG00000001725
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnrc6c1ENSDARG00000076847Danio rerio
 tnrc6c2ENSDARG00000103851Danio rerio
 Q9HCJ0ENSG00000078687Homo sapiens
 Tnrc6cENSMUSG00000025571Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNRC6A / trinucleotide repeat containing 6A / Q8NDV7*ENSGALG0000000606846
Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSGALG0000001205038


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR009060  UBA-like superfamily
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR015940  Ubiquitin-associated domain
 IPR019486  Argonaute hook domain
 IPR026805  GW182, middle domain
 IPR032226  TNRC6, PABC binding domain
 IPR033499  Trinucleotide repeat-containing gene 6C protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035195 gene silencing by miRNA IEA
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA
 biological_processGO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
 biological_processGO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
Post-transcriptional silencing by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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