ENSGALG00000012050


Gallus gallus

Features
Gene ID: ENSGALG00000012050
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Q8BKI2 / Q9UPQ9 / TNRC6B / trinucleotide repeat containing 6B
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 50154486
Gene end: 50243306
  
Corresponding Affymetrix probe sets: Gga.11723.1.S1_s_at (Chicken Array)   Gga.11723.2.S1_s_at (Chicken Array)   Gga.14383.1.S1_at (Chicken Array)   Gga.14383.1.S1_s_at (Chicken Array)   Gga.7335.1.S1_at (Chicken Array)   GgaAffx.23766.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019656
NCBI entrez gene - 418010     See in Manteia.
RefSeq - XM_004937723
RefSeq - XM_004937724
RefSeq - XM_004937725
RefSeq - XM_004937731
RefSeq - XM_015288794
RefSeq - XM_015288799
RefSeq - XM_015288805
RefSeq - XM_015288813
RefSeq - XM_004937722
swissprot - E1BQG1
Ensembl - ENSGALG00000012050
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:dkey-217f16.6ENSDARG00000076389Danio rerio
 si:dkey-46g23.1ENSDARG00000079723Danio rerio
 tnrc6bENSDARG00000074161Danio rerio
 Q9UPQ9ENSG00000100354Homo sapiens
 Q8BKI2ENSMUSG00000047888Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNRC6C / trinucleotide repeat containing 6C / Q9HCJ0*ENSGALG0000000172540
TNRC6A / trinucleotide repeat containing 6A / Q8NDV7*ENSGALG0000000606839


Protein motifs (from Interpro)
Interpro ID Name
 IPR019486  Argonaute hook domain
 IPR032226  TNRC6, PABC binding domain
 IPR033500  Trinucleotide repeat-containing gene 6B protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA


Pathways (from Reactome)
Pathway description
Post-transcriptional silencing by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr