ENSDARG00000074161


Danio rerio

Features
Gene ID: ENSDARG00000074161
  
Biological name :tnrc6b
  
Synonyms : tnrc6b / trinucleotide repeat containing 6b
  
Possible biological names infered from orthology : Q8BKI2 / Q9UPQ9
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 19281189
Gene end: 19301988
  
Corresponding Affymetrix probe sets: Dr.10560.1.A1_at (Zebrafish Array)   Dr.97.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000127361
NCBI entrez gene - 321362     See in Manteia.
RefSeq - XM_021474236
RefSeq - XM_021480466
swissprot - U3JAU2
ZFIN ID - ZDB-GENE-030131-13
Ensembl - ENSDARG00000074161
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000012050Gallus gallus
 Q9UPQ9ENSG00000100354Homo sapiens
 Q8BKI2ENSMUSG00000047888Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-46g23.1 / Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSDARG0000007972334
tnrc6c1 / trinucleotide repeat containing 6C1 / Q9HCJ0* / TNRC6C* / trinucleotide repeat containing 6C*ENSDARG0000007684727
si:dkey-217f16.6 / Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSDARG0000007638925
tnrc6a / trinucleotide repeat containing 6a / Q8NDV7*ENSDARG0000007968824
tnrc6c2 / trinucleotide repeat containing 6C2 / Q9HCJ0* / TNRC6C* / trinucleotide repeat containing 6C*ENSDARG0000010385123


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR032226  TNRC6, PABC binding domain
 IPR033500  Trinucleotide repeat-containing gene 6B protein
 IPR034925  TNRC6B, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
Post-transcriptional silencing by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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