ENSDARG00000079688


Danio rerio

Features
Gene ID: ENSDARG00000079688
  
Biological name :tnrc6a
  
Synonyms : tnrc6a / trinucleotide repeat containing 6a
  
Possible biological names infered from orthology : Q8NDV7
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 35495570
Gene end: 35533366
  
Corresponding Affymetrix probe sets: Dr.11108.1.S1_at (Zebrafish Array)   Dr.18336.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000135865
Ensembl peptide - ENSDARP00000100679
Ensembl peptide - ENSDARP00000143545
Ensembl peptide - ENSDARP00000148693
swissprot - E7FGM4
swissprot - A0A0R4IJ26
ZFIN ID - ZDB-GENE-030131-2519
Ensembl - ENSDARG00000079688
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNRC6AENSGALG00000006068Gallus gallus
 Q8NDV7ENSG00000090905Homo sapiens
 Tnrc6aENSMUSG00000052707Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnrc6c1 / trinucleotide repeat containing 6C1 / Q9HCJ0* / TNRC6C* / trinucleotide repeat containing 6C*ENSDARG0000007684735
tnrc6c2 / trinucleotide repeat containing 6C2 / Q9HCJ0* / TNRC6C* / trinucleotide repeat containing 6C*ENSDARG0000010385133
tnrc6b / trinucleotide repeat containing 6b / Q8BKI2* / Q9UPQ9*ENSDARG0000007416127
si:dkey-46g23.1 / Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSDARG0000007972320
si:dkey-217f16.6 / Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSDARG0000007638916


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR019486  Argonaute hook domain
 IPR032226  TNRC6, PABC binding domain
 IPR033501  Trinucleotide repeat-containing gene 6A protein
 IPR034924  TNRC6A, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IDA
 biological_processGO:0017148 negative regulation of translation IDA
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
Post-transcriptional silencing by small RNAs
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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