ENSDARG00000079723


Danio rerio

Features
Gene ID: ENSDARG00000079723
  
Biological name :si:dkey-46g23.1
  
Synonyms : si:dkey-46g23.1
  
Possible biological names infered from orthology : Q8BKI2 / Q9UPQ9 / TNRC6B / trinucleotide repeat containing 6B
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 3335167
Gene end: 3372259
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000123092
Ensembl peptide - ENSDARP00000098925
Ensembl peptide - ENSDARP00000144464
NCBI entrez gene - 793145     See in Manteia.
swissprot - E7F923
swissprot - F1QG93
ZFIN ID - ZDB-GENE-070705-475
Ensembl - ENSDARG00000079723
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000012050Gallus gallus
 Q9UPQ9ENSG00000100354Homo sapiens
 Q8BKI2ENSMUSG00000047888Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-217f16.6 / Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSDARG0000007638959
tnrc6b / trinucleotide repeat containing 6b / Q8BKI2* / Q9UPQ9*ENSDARG0000007416145
tnrc6c1 / trinucleotide repeat containing 6C1 / Q9HCJ0* / TNRC6C* / trinucleotide repeat containing 6C*ENSDARG0000007684728
tnrc6c2 / trinucleotide repeat containing 6C2 / Q9HCJ0* / TNRC6C* / trinucleotide repeat containing 6C*ENSDARG0000010385125
tnrc6a / trinucleotide repeat containing 6a / Q8NDV7*ENSDARG0000007968824


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR032226  TNRC6, PABC binding domain
 IPR033500  Trinucleotide repeat-containing gene 6B protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
Post-transcriptional silencing by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr