ENSGALG00000006068


Gallus gallus

Features
Gene ID: ENSGALG00000006068
  
Biological name :TNRC6A
  
Synonyms : TNRC6A / trinucleotide repeat containing 6A
  
Possible biological names infered from orthology : Q8NDV7
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 6868966
Gene end: 6909046
  
Corresponding Affymetrix probe sets: Gga.11607.2.S1_s_at (Chicken Array)   Gga.17158.1.S1_at (Chicken Array)   GgaAffx.20306.1.S1_s_at (Chicken Array)   GgaAffx.26729.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009774
Ensembl peptide - ENSGALP00000055193
Ensembl peptide - ENSGALP00000054164
Ensembl peptide - ENSGALP00000047937
Ensembl peptide - ENSGALP00000044920
Ensembl peptide - ENSGALP00000044880
Ensembl peptide - ENSGALP00000044464
NCBI entrez gene - 416570     See in Manteia.
RefSeq - XM_015294493
RefSeq - XM_015294486
RefSeq - XM_015294487
RefSeq - XM_015294488
RefSeq - XM_015294489
RefSeq - XM_015294490
RefSeq - XM_015294491
RefSeq - XM_015294492
RefSeq - XM_015294483
RefSeq - XM_015294484
RefSeq - XM_015294485
swissprot - A0A1D5PMS7
swissprot - A0A1D5P5G9
swissprot - A0A1D5NX27
swissprot - A0A1D5NWY7
swissprot - A0A1D5NVT7
swissprot - F1NAU7
swissprot - A0A1D5PQM8
Ensembl - ENSGALG00000006068
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnrc6aENSDARG00000079688Danio rerio
 Q8NDV7ENSG00000090905Homo sapiens
 Tnrc6aENSMUSG00000052707Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNRC6C / trinucleotide repeat containing 6C / Q9HCJ0*ENSGALG0000000172545
Q8BKI2* / Q9UPQ9* / TNRC6B* / trinucleotide repeat containing 6B*ENSGALG0000001205036


Protein motifs (from Interpro)
Interpro ID Name
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR019486  Argonaute hook domain
 IPR032226  TNRC6, PABC binding domain
 IPR033501  Trinucleotide repeat-containing gene 6A protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035195 gene silencing by miRNA IEA
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0035068 micro-ribonucleoprotein complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
Post-transcriptional silencing by small RNAs
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr