ENSGALG00000001954


Gallus gallus

Features
Gene ID: ENSGALG00000001954
  
Biological name :APTX
  
Synonyms : aprataxin / APTX
  
Possible biological names infered from orthology : Q7TQC5 / Q7Z2E3
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 70584679
Gene end: 70593677
  
Corresponding Affymetrix probe sets: Gga.9488.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049764
Ensembl peptide - ENSGALP00000003019
NCBI entrez gene - 395173     See in Manteia.
RefSeq - XM_015280583
RefSeq - NM_001293074
RefSeq - XM_004949612
RefSeq Peptide - NP_001280003
swissprot - F1P5K8
swissprot - A0A1D5PAK1
Ensembl - ENSGALG00000001954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 aptxENSDARG00000027143Danio rerio
 APTXENSG00000137074Homo sapiens
 AptxENSMUSG00000028411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000253  Forkhead-associated (FHA) domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011146  HIT-like domain
 IPR019808  Histidine triad, conserved site
 IPR026963  Aprataxin
 IPR032566  Aprataxin, C2HE/C2H2/C2HC zinc finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000012 single strand break repair IEA
 biological_processGO:0006266 DNA ligation IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0031647 regulation of protein stability IEA
 biological_processGO:0042542 response to hydrogen peroxide IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0008967 phosphoglycolate phosphatase activity IEA
 molecular_functionGO:0033699 DNA 5"-adenosine monophosphate hydrolase activity IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA
 molecular_functionGO:0051219 phosphoprotein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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